| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0523 |
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| Symbol | |
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| ID | 4173507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 607394 |
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| End bp | 610831 |
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| Gene Length | 3438 bp |
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| Protein Length | 1145 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053525 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_660106 |
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| Protein GI | 109896851 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTTAG GTTGGATGGT ATTAGCCATC GTCTATTTGA TGGGATTGTT TTGGGTAGCC
AAATGGGGAG ACGGGAAGAG CCCTCTGGCC AAACGTATTA GCTCACACCC TGCAATTTAT
TCGCTGGCAC TGGCAATTTA CTGTACCGCG TGGACTTTTT TTGGCTCTGT CGGCGAGGCA
TCAAGAGATA CATGGGATTA TTTGCCCATC TTTTTAGGCC CCATGTTGTT GTATTTGTTC
GGGTATCGCT TCTTGCGCAA ACTGATTGCG GTGAGTAAAC GTCAGCACAT TACCACGATT
GCCGATTTCA TTTCGTCTCG TTACGGTAAG CGTCAAACTA TCGCCTTACT CGTCACCTTA
ATAGCGCTGT TAGCCATTAT TCCTTATATC GCTTTGCAAC TAAAAGCCGT TGGTTCAGCA
TTTTTAATGG TATCAGGCCA GACTCATGCG GAGCTAGTGG TGCTAGGCGC CACCACGTTT
ATTGCTTTGT TCTCTATCTA TTTCGGTACT CAGCACACAG ATGTGACTGA GTACCGGCGC
GGGTTAATGG TAGCAATTTC CTTTGAGTCG GTGATTAAAT TATGCGCTTT GATTGCCGTG
GCTAGTTTTG GGTATCTAAC ATATTCACAA CATTCCGATA CTCCGTTACT GCAAGAGTTC
ACCACCCTTA ACGCACTGGG CAATATATGG TCATTCTCAT TTTTTGCACA AACCCTCATG
GCCGCTGGCG CAGTAGTATG TCTGCCTCGC CAGTTTCACG TCGCTATTGT AGATAACTTA
AAGCTCAGTC ACTTAAAAAC CGCTCGTTGG TTATTCCCAC TGTACTTATT GTGTATCGCG
ATCCTGATCC CAATTATTTC TGCGGCAGGA GACGACATGT TCCGCTTAAC CAGCCAAGAG
CCAGATACAT ACGTGCTAGG CATGGCGATG AATAGCGGCA ATATGTTATT ACAAGTACTG
GTATTTGTAG GTGGCTTATC TGCTGCCACA GCGATGATCA TCGTCGCCAC GTTAACCCTG
AGCACCATGC TGACCAACGA TGTAATTTTG CCGAATTTGT TAGCGGAGCA TCGCGGCGCA
GGTGTTCCGC CCAATTTCAC TAAACGCATT CTGCTTATTC GCCGTTTGGT TATCGCTGCT
ATTTTGTCTT TAGCCTATTT GTATTATCAA CAAATGACTG ACAGTCGTAC TCTTGCCTCT
ATTGGACTGA TCGCATTTTC TCTGGTCATA CAGTTGTTAC CCGCCATTGT CGGCGGTTTA
TATTGGAAGC GAGGCCATGC GCAAGGGGTT TACGCTGGCC TAATGGCCGG TATTGGCTCA
TGGATATTGT GGTTAATGCT GCCTTTGTTA AATGACGCAG GGCAAAACCT GATACTCAAC
GACACCATTA ACGCCGTCGC CATTTATAGC TTGCTCGCCA ACACCTTTGC TTATGTGTTG
TTTTCCTATG TGGCAGATGT TCGTCTAATT GATCGCATTC AAGCGGAGGC CTTTGTCACC
ACCACGGATG ACAAGTCAAA ACATCATAAT GCGCCTCGCA CCCACACCAC AGTTGAAGAT
TTACACACGT TATTAAGCAC CTTTTTAGGG GAGAAACGGT GTAAACAATT GCTAAGTGAT
TACCAACAAC GTAACGGCCA TATTCTAAAT CCAGCGGAGT CTGCCACTGA AGAGTTTGTA
CTCTTTAGCG AACGAGCTCT TGGCGGCGTA ATAGGCGCTT CTTCTGCAAA AGCGTTAGTC
GACAGCGCTA TAAGTGGTAA AAAGTTGAAT TTCGAAGAAG TCGTTAACTT TTTTGACGAT
ACCACTCAGG CAATCCAATT TAATATGAGC GCCTTGGTCG CCTCATTAGA AAGTCTCGAA
CAAGGAATAA GCGTGATTGA CCGAGACTTA AATTTAGTCG CGTGGAACAA AAGCTACTTA
GCGCTCTTTA GTTACCCAGC AAATATGATC CGCGTGGGCC GACCTGTAGA AGATCTTGTT
CGATACAATG CTCAGCGTGG TGAGTGCGGT GCGGGCGAAG TAGAAATCTT AGTTCAAAAG
CGACTTGAGC ACATGCGCAA AGGCACCAGC CATCGCTTTT TGCGGCAGCG CAGTGACGGC
AGAACGTTAG AGATGATCGG TACCCCGTTA CCTGGGGGCG GATTTGTGAC CAGTTTTAAC
GATGTAACAG AGCACATTGA AACCCAACAC GCTCTAAAAG AAGCCAATAT CGATTTAGAA
AATCGAATAC AAAAACGCAG TCAAGAAGTG CAAACCATTA ACGCTGAGTT GCGTTTGGAA
ATACAGCGCC GGGCGGACGC TGAAACCCAA TTGGTCAGTG CGCGTAAGGT AGCAGAGCAG
GCTAACGCCA GTAAAACGCG CTTTTTGGCG CTTGCCAGTC ACGACATTTT GCAGCCGTTA
AATGCCGCTA AGTTATATCT TGGTGCGTTA GAAGAAGCTA AGCTAAATGA CGATGCAAGG
CAAACCGTTG GCAAACTATC CAATAGCATC CAGGCCAGTG AAGCACTCAT CGCCACGCTT
TTAGATATTG CGCGTATTGA TCAAGGTGAG TTAAAGCCGG AATACAAAGC GATTAACGTA
CGCGATGTGC TGCAACCGCT TATCGCTGAA TTTGAACTCA TTGCCGAACA CAAAGGTTTG
CAACTGCGTT CCCGGGTGGC TGATGTATGG GTAAAAACCG ATCGTACATA TCTTTATCGC
ATCATGCAGA ACTTTGTTTC TAATGCCCTG AAATATACCC AGACTGGAGG CGTATTGGTC
TCTGTTCGAA CGAAGGGAGA AAATGTAGCG TTCGACGTTT TTGACACGGG CTCTGGCATT
GCGCCAGATC AATTAGACAA GATATTCGGC GATTTTTATC GTATATCCGG CCATCAACAA
CAAGGCGTGG GATTAGGACT TGGCGTTGTA CAAAGACTTG CCAGTATTCT GGATGCAAAT
TTAACGGTCG CTTCGCGTAT CAACCATGGA AGCCGTTTCA GCATTCAATT ACCCTCCAGT
CGGCCGATTG AAACAAACAG CCCAGTGCAA ATAAATAAGG TGGGGTTTCA TGACCTGAAA
GTGCTTTGTG TCGACGATCA AAGTCAGAAC CTTGATGCAC TGCAATCGTT ATTGGCGAAA
TGGAAAGTGG TTTCTCACTC TGAGCAAACC CCTAGCGCTG CGTTGGCATC TTTAGGGCAT
TTTGTACCAG ATGTGATCTT AATGGATTTT CAGTTGAGCA GCGATATAGA CGGGCTACAG
CTTATTGAGC AGTTAAGAGA GCGTATCTGT GATATTCATG CCAATAATGT TCCAGCGATC
TTGATTACCG CTAATATTGA ACTTGAGTTA GTGCAACGCT GTAAAGAGCA AGGTTGTGGC
TATTTGTCTA AACCTGTGAA GCCGGCTAAG TTGAGGGCGC TGCTGCAGGC GGCTCAAGCT
GAAGTTGTGA GGCAATAA
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| Protein sequence | MALGWMVLAI VYLMGLFWVA KWGDGKSPLA KRISSHPAIY SLALAIYCTA WTFFGSVGEA
SRDTWDYLPI FLGPMLLYLF GYRFLRKLIA VSKRQHITTI ADFISSRYGK RQTIALLVTL
IALLAIIPYI ALQLKAVGSA FLMVSGQTHA ELVVLGATTF IALFSIYFGT QHTDVTEYRR
GLMVAISFES VIKLCALIAV ASFGYLTYSQ HSDTPLLQEF TTLNALGNIW SFSFFAQTLM
AAGAVVCLPR QFHVAIVDNL KLSHLKTARW LFPLYLLCIA ILIPIISAAG DDMFRLTSQE
PDTYVLGMAM NSGNMLLQVL VFVGGLSAAT AMIIVATLTL STMLTNDVIL PNLLAEHRGA
GVPPNFTKRI LLIRRLVIAA ILSLAYLYYQ QMTDSRTLAS IGLIAFSLVI QLLPAIVGGL
YWKRGHAQGV YAGLMAGIGS WILWLMLPLL NDAGQNLILN DTINAVAIYS LLANTFAYVL
FSYVADVRLI DRIQAEAFVT TTDDKSKHHN APRTHTTVED LHTLLSTFLG EKRCKQLLSD
YQQRNGHILN PAESATEEFV LFSERALGGV IGASSAKALV DSAISGKKLN FEEVVNFFDD
TTQAIQFNMS ALVASLESLE QGISVIDRDL NLVAWNKSYL ALFSYPANMI RVGRPVEDLV
RYNAQRGECG AGEVEILVQK RLEHMRKGTS HRFLRQRSDG RTLEMIGTPL PGGGFVTSFN
DVTEHIETQH ALKEANIDLE NRIQKRSQEV QTINAELRLE IQRRADAETQ LVSARKVAEQ
ANASKTRFLA LASHDILQPL NAAKLYLGAL EEAKLNDDAR QTVGKLSNSI QASEALIATL
LDIARIDQGE LKPEYKAINV RDVLQPLIAE FELIAEHKGL QLRSRVADVW VKTDRTYLYR
IMQNFVSNAL KYTQTGGVLV SVRTKGENVA FDVFDTGSGI APDQLDKIFG DFYRISGHQQ
QGVGLGLGVV QRLASILDAN LTVASRINHG SRFSIQLPSS RPIETNSPVQ INKVGFHDLK
VLCVDDQSQN LDALQSLLAK WKVVSHSEQT PSAALASLGH FVPDVILMDF QLSSDIDGLQ
LIEQLRERIC DIHANNVPAI LITANIELEL VQRCKEQGCG YLSKPVKPAK LRALLQAAQA
EVVRQ
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