Gene Patl_0522 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0522 
Symbol 
ID4173506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp606787 
End bp607446 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content45% 
IMG OID638053524 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_660105 
Protein GI109896850 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAACGC TACTGGTTGC AGATGATCAT CCCTTGTATA GGGATGCTTT ACGCGGAGCC 
TTAACACTGT CGTTCAGCGA TTTAACGTTG CTTGAAGCAG CCGATTTAAT GCAAACAGTA
GCCTTATTAG AAGAGCATAA AGACATTGAT TTGTTGCTCT TGGATTTACA CATGCCAGGC
AGTGGTGATT TGTTTGGTCT GATACATATT CGTAAGCTAT TCCCTGAATT ACCAGTGGCT
GTGGTGTCAG GTTTAGAAGA TCCGATGATT ATCACCAAAG TGATTAATCT AGGCGCCTTA
GGTTTTGTGC CTAAGACCAC TGGGGCGGCA CAAATCGCTG ATGCGGTAAC CAGTATGCTA
GAAGGTGACA TTTGGTTACC CGAGAGTTAT GCCAGTGATG AAGTGGAATT AGACAATGAA
TTTGCTGAGC TGGCTGATAA TGTGGCCAGT TTAACACCTG CGCAATATAA GGTGTTGTGC
TATATGCGAG ATGGCTTATT AAACAAGCAA ATCGCTTACA ACCTAGATAT AGCAACCGCC
ACGGTGAAAG CACACGTGAC GGCTATCTTC AAGAAATTAC ACATCAATAA TCGAACTCAA
GCCGTGCTTA TTGCCTCACA ACTTCAGCTT GAGCCGCCTG CAGCAGCGCC CTCAACTTAG
 
Protein sequence
MITLLVADDH PLYRDALRGA LTLSFSDLTL LEAADLMQTV ALLEEHKDID LLLLDLHMPG 
SGDLFGLIHI RKLFPELPVA VVSGLEDPMI ITKVINLGAL GFVPKTTGAA QIADAVTSML
EGDIWLPESY ASDEVELDNE FAELADNVAS LTPAQYKVLC YMRDGLLNKQ IAYNLDIATA
TVKAHVTAIF KKLHINNRTQ AVLIASQLQL EPPAAAPST