Gene Patl_0489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0489 
Symbol 
ID4172716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp564933 
End bp567278 
Gene Length2346 bp 
Protein Length781 aa 
Translation table11 
GC content45% 
IMG OID638053492 
Productpenicillin-binding protein 1B 
Protein accessionYP_660073 
Protein GI109896818 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02071] penicillin-binding protein 1B 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.290067 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA CCGCTAAAAA TAAGTCTAAA TCCAGCCAGT CAGGGGCATC ATCCAAGCTC 
AGGCATTTAC ACCCTTGGGC GTGGCTTAAG CGCAATTGGT GGCGCTTACT CATTATTTTG
ACCGCCGTTG TAGCTGCATA CGGAGTGTAT TTAGACGCAC AAATTGTGAA GCAATTTAGT
GGTAATAAAT GGCAGGTGCC TGCTCAAATT TTTGCGCGCC CGATGCATTT TGAGCTTAAA
CAAGAGATAA CGACTCAAGA GATAGTTGAG GAACTAGAAC TACTTGGTTA TCGCAAAGTA
CGCCACGCAG ACGATACCGG AGAATATCAA TTAAAGGCCT CAGGGGTACG TATTCAACGT
CGTGCTTTTC ATTTTCCTCA TGGCAAAGAA TCTGAAGTCG CACTGGACAT AACACTGGCC
AATGGCCGGG TTGCAAGCTT ACGCAATTTA GATAATAACC AAGCCTTAAA TGACGTTTAC
TTGGAGCCTT GGCTTGTGAC TCGCCTAATG AGCAGTGGGC GAGAAGATCG CATGTTGGTC
AATTTAGACG GCGTACCGCA GTCCCTTATC AAGGCGTTGG TGTTGGTTGA AGATAAAGAC
TTTTACAAAC ATTATGGTAT TGCACCGCTT TCTATATTAC GCGCACTTAT TGCCAATGTA
TCCGCAGGGC GAGCGGTTCA AGGCGGCAGC ACTTTGACCC AGCAATTGGT TAAAAATCTG
TTTTTAACCA ATGAAAAGTC ACTGGTACGC AAAGCTAAAG AAGCATTAAT GGCGTTGATT
ATCGACGCAC GTTACAGCAA AGATGAAATT ATCGAAGCGT ATCTCAATGA AGTTTTTCTC
GGTCAAAATG GCAACACAGG TGTACATGGT TTTGGTTTAG CCAGCTTGTT TTATTTCGAC
CGTCCGATTG CTGAATTAAA CGTAGCGGAA ATAGCGACCT TGGTTGGTAT CATAAAAGGG
CCGTCTTATT ACAATCCAAG ACGTCATCCT GAGCGAGTCA TTGAGCGTAG AAATTTGGTA
CTGCGTATCC TATTTGAAAA CAACGAACTG CAAAGAAACG AATACGAATA CGCTATTAAT
CAACCTCTTA ATTTGGCAAC CGGGGCAAGT TTAACCTCTG GAAAGCACCC TGCCTTTATG
AGCATGGTGC GCAGAGAATT AAAAACGGTT TTGTCGGACC CAAACATGCG AGAGTCTGGT
CTGAAAGTCT TCACGACCTT GGACTCTGTG GCCCAGAGAA AAGCCGAACA AGCCCTAAAA
GTGGGAGTGA AAGCCCAGCA AAAGCGTATG AAACTGACCG CTTTGCAAGC AGCTATGGTG
GTAACGGATA TTAAAAGCGG TGAAGTACGC TCCATCGTCG GTGACGTTAA TCCGCAATTT
CAAGGCTTTA ATCGGGCACT CGACGCCAAA AGAGCTATCG GTTCACTGAT AAAACCTGCC
ATTTACTTGA CCGCATTAGA GCGTGCGGCG CAATATAATT TGGCGACTCC GTTAAAAGAC
GAACCCATTA GCTTAAAAAG TACCTATGGA AAAATGTGGG AGCCGAAAAA CGCCGATAAA
AAATTCCGCG GTCAAGTCAG TTTAGTGGAA GCGTTAACAC AATCCTTGAA TGTTCCAACG
GTAAACTTGG GCATGGAAGT CGGGCTAGAC GATATTGCTG CCACCGTGGA GCGTTTAGGC
GTGAACGAGC CGATGGATAT CTATCCAGCA ATGACGTTAG GGGCGGTGAA TTTATCTCCT
ATTCAAGTCA ATCAGATGTA TCAAACCATC GCAAACAATG GGCGATTCAT TCCTTTGCAC
GCGGTAACGG CCGTTTTATC TCCGAAGAAC AAGCCATTAT GGCGTTTTAG TGCAAGAGGG
GAGCAGCGAG CAGATCATAA AGCCACTTAC TTATTAAACT ACGCACTACA CAAAGTGACG
CGTGAAGGGA CGGCAAGACA GATAAAACAA ACCTTCGGCG ATATCAATAT GGCAGGTAAA
ACCGGCACCA CAGATGATTA TCGTGACAGT TGGTTCAGCG GATTTGATAA TAATATTTTA
GTAACCAGTT GGATGGGGAA AGACAACAAC GAACCTATTA ATTTGAGCGG TGCCAGTGGT
GCTATGCAGT TATTTATTGG TTACCAGAAG CTGCAGCAAC CTAAGTCATT CGTCAGGCGC
TATCCTAAAG GGTTGGGTAT TGCCCATTTT GAAGAGCAAA GCGGTGCGCT TAGCCGCCCA
GGTTGTGCTA ATACCATTAG TGTTCCGGCG ATTTTGGACG CCCTTCCTCC TGTGCCAAAA
ACCTGTAACG GGGAAGTACG AGGCCCACTC AAGAAATCAC TATGGGAAAG GCTGTTCGGT
AACTAA
 
Protein sequence
MKKTAKNKSK SSQSGASSKL RHLHPWAWLK RNWWRLLIIL TAVVAAYGVY LDAQIVKQFS 
GNKWQVPAQI FARPMHFELK QEITTQEIVE ELELLGYRKV RHADDTGEYQ LKASGVRIQR
RAFHFPHGKE SEVALDITLA NGRVASLRNL DNNQALNDVY LEPWLVTRLM SSGREDRMLV
NLDGVPQSLI KALVLVEDKD FYKHYGIAPL SILRALIANV SAGRAVQGGS TLTQQLVKNL
FLTNEKSLVR KAKEALMALI IDARYSKDEI IEAYLNEVFL GQNGNTGVHG FGLASLFYFD
RPIAELNVAE IATLVGIIKG PSYYNPRRHP ERVIERRNLV LRILFENNEL QRNEYEYAIN
QPLNLATGAS LTSGKHPAFM SMVRRELKTV LSDPNMRESG LKVFTTLDSV AQRKAEQALK
VGVKAQQKRM KLTALQAAMV VTDIKSGEVR SIVGDVNPQF QGFNRALDAK RAIGSLIKPA
IYLTALERAA QYNLATPLKD EPISLKSTYG KMWEPKNADK KFRGQVSLVE ALTQSLNVPT
VNLGMEVGLD DIAATVERLG VNEPMDIYPA MTLGAVNLSP IQVNQMYQTI ANNGRFIPLH
AVTAVLSPKN KPLWRFSARG EQRADHKATY LLNYALHKVT REGTARQIKQ TFGDINMAGK
TGTTDDYRDS WFSGFDNNIL VTSWMGKDNN EPINLSGASG AMQLFIGYQK LQQPKSFVRR
YPKGLGIAHF EEQSGALSRP GCANTISVPA ILDALPPVPK TCNGEVRGPL KKSLWERLFG
N