Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0466 |
Symbol | |
ID | 4171809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 541570 |
End bp | 544911 |
Gene Length | 3342 bp |
Protein Length | 1113 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053469 |
Product | amidohydrolase |
Protein accession | YP_660050 |
Protein GI | 109896795 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.83396 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATAAGA ATCTTATCAA CGTCGCGCTA TTTAGCACGA TGCTAAGCTT AAGCGCTGAC GCATTCAGTC GCGTTGAGCT TCAAAAGGCT AAGCAAAATG CACTCACAGA AGAAAGCAGC GAAGCAGAAT GGGACGTATT AAATCCCCCC TTTAACTTAA ACGAAGTCAC CATCAATACT GATGAAACGA CTTGGTCTAG TCTTGATGTT TCGCCAAATG GTGAGAAATT TGTTTTTGAT ATGCTAGGCG ATCTATATGT CAGCTCTATC GGCGGCGGCG AGGCCACCTC GTTAACGCAA GATTTCGCAT GGAATATCCA ACCTACGTTC AGCCCTGATG GCAAAAAAAT AGCGTTTATA TCCGATCGCG GTGGCATGTC GAACGTTTGG GTGATGAACA GTGACGGCAG CAATTTAGTG CAAGTAACCA AGGAGAAGAA TAACTTAATT CATTCTCCTA AATGGAGCCC TGACGGCCAA TATATAGTGG CGAATAAAGG GATAATGTCT AGCCGCAGTA TTCCGGCAGG CGAAATCTGG CTATATCATC ACTCTGGCGG TGATGGCATG GTGCTTAAGA AACGTGTGCA TGGCAACCCA GATCAAAAGA ACATAGCGGA CCCGGCTTTC TCCCCCGATG GGAAATACCT GTATTACACC CAAGATGTAT CACCCGGTAG CACCTTTGAT TATAACCGTG ACCCGCTAAA ATCTATCTTC GCCATTACTC GTTACGATAT GAACACAGGC GAAGAAGAAC GGTACATCAG CGGCACTGGG GGAGCTGTTG TTCCTACCCC CTCTCCAGAC GGTAAGCAGA TTGCTTTCAT ACGCAGAGTT AAAGAGAAAA CCGGACTGTT TGTTAAAGAT ATTGCCACAG GTGTTGAATC CCTTCTCTAC TTAAAACTTG AACGTGACAT GCAAGAAGGG TTCGGCTCAG AAGGGTATTT TCCTTACTTT GATTGGATGC CCAATTCAAA ACGTATCGTG TTTTGGACCG GTGGTAAATT CCACTCAATT GATGTGAAAA CGCAAGCAGT TAAAGACATT CCTGTATCAG TAAAAGCAAC CGTAAAATAC GCAGATGCAG TGCGTTTTGA CGTTGATGTG GCACCCGAAA AATTTGCGGT AAAAATGGCG CGCTGGGCGC AGAAATCCCC TAATGGGCAA AACATCGTTT TTCAGGCGCT TGGTAAGCTT TATATTAAAG AGATCAAAAG CGGTAAAGTG AAACGCCTTA CTCGGCAGAA CGATCATGAC GAGTACTATC CTCGCTACTC TCACGATGGT AAAAAAATTG TTTTCACCAC ATGGAACGAT AAAGACTTAG GCAGCGTGCG CACTGTATCC GCTTCCGGTC GTTCAGAAAA AGTAATCAGC AAAGAGCCTG GGCACTTTAT CGAGCCAAGC TTCTCTACGG ACGACAAACT GATTACCTAC AATAAGAAAA CTGGCGGCTA TTTATTGGCC CCAGAATACT CTGTGGAACC TGGTATCTAT ACCGCTACGG TAAAGGGTGA AAAACACAGG CGTGTCGCCA AAAACGGTAG CGCGCCACAT TTCGCTGGTG ACAACAGCCG GGTGTATTTT ACCGAGTCTG TATCTGGCAG TGATTACCCT GAACAACAGT TAGTCAGTGT TGACCTCAAT GGCGAAGATA AACGTGAACA TTTATACGGT GGTGACAAAA TCGCTGAGTA TCGCTTATCC CCAGATAAAA AATGGATTGC CTTCGTATAT CAATATAAAG CGTACGTTGC ACCTTTCACC GAGATAGGCC AAAAACAAGA TATTGGCCCT AAAAGTACCA CCATTCCTAT TAAGCAACTC TCGGATCGCG CAGGAGAATA TCTGACTTGG CGCAGCGACA GCCAAGCGAT TAGTTGGTAT CACGCAGCGA CTTACTATGA GCGCGAGTTA AAAGAAGCAT TTGCATTCGT ACCCGGCGCA GCCGAAGATT TACCTGACCC TGTTACTGAG GGCATGTCAC TCTCATTTGA GCAGAAAACC GATAAGCCCT CAGGTTATAA AGCACTTGTG GGCGGTACAG TTGTCACTAT GCGTGACGCC AATAACCAAC AAGAAATCAT TGAAGATGCT GTGGTTGTTA TCAAGGACAA TAAGATTGTT GAAGTGGGCA AACGTGCAGA CATTACTATT CCCAACAATG CTCTTAAAAT TGACACCACT GGCAAAACAA TTCTACCAGG CTTGATTGAT GCTCACGCTC ATGGCTCACA AGGCAGTAAC GAGATTATCC CAGAGCAAAA CTGGAACATG TACTCAGCTC TCGCCTTTGG TGTGACGACT ATCCATGACC CATCAAATGA CACCTCGGAA ATTTTTGCTG CCAGCGAATT GCAAAAAGCT GGCAAACGCG TTGCCCCTCG CACCTACTCT ACCGGTACCA TTATTTATGG TGCGGAAGCC CTAGGCTATA AGGCGATTAT TAATAGCTAT GAGGATGCAC TGACTCACTT GCGTCGCCTT AAGGATGCCG GAGCGATTTC AGTTAAAAGT TATAACCAAC CTCGCCGCGA CCAACGCCAG CAAATATTAG CCGCGGCCCG TGAATTAAAC CTGATGGTGG TGCCAGAAGG TGGCGGTAAA TATCAGCAAA ATATCTCTAT GTTAGTAGAT GGTCATACAG GACTCGAGCA TTCTCTTCCA ATAGCGAGAG GCTATCAAGA CTTGACGGCA TTGTGGGTGG AAACTGAGTT TGGTTACACC CCAACGTTTG TAGTGTCCTA TGGCGGCCTA ATGGGTGAAG AGTATTGGTA TGACCGCACA GAGGTATGGA AAAACGAAAG ACTTCTGCGC TACACACCTA GCTTTCTGTT AGATAGGCGC GCTATTCGTC GCCCTACCGC CCCAGATAAT CAATACAACC ACGTATTTGT TGCACAATAC GCTAAAACAT TACGTGATAA AGGCGTAAGC GTACATATCG GCGCTCACGG GCAACGTGAA GGCTTAGCTG CGCACTGGGA GCTTTGGCTA ATGACGCAAG GTGGTTTCAC ACCATGGGAA GCACTGCGAG GAGGCACTAT TGATGGCGCC ACGCACCTAG GCATGGGCAA GCAACTAGGA AGTATTGAAG CAGGCAAGTT AGCGGATATG ATGATTATCG ACGGCGACGT ATTAACGGAT ATTCGCCGCA GCGAATATGT AACTTATACC GTAATCAACG GCCGTATATA TGATGCAGCG ACCATGAACG AAGTGGGCAG CAAAACCAAG CGCCCTGCTT TCTTCTTTGA AAATAACAAT ACACTCTTTA TGCCTGAGGC AACACAACAG AGTATTCAAC AAAAATCAGA GAAGCATCAC TGGGTTCACT AA
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Protein sequence | MYKNLINVAL FSTMLSLSAD AFSRVELQKA KQNALTEESS EAEWDVLNPP FNLNEVTINT DETTWSSLDV SPNGEKFVFD MLGDLYVSSI GGGEATSLTQ DFAWNIQPTF SPDGKKIAFI SDRGGMSNVW VMNSDGSNLV QVTKEKNNLI HSPKWSPDGQ YIVANKGIMS SRSIPAGEIW LYHHSGGDGM VLKKRVHGNP DQKNIADPAF SPDGKYLYYT QDVSPGSTFD YNRDPLKSIF AITRYDMNTG EEERYISGTG GAVVPTPSPD GKQIAFIRRV KEKTGLFVKD IATGVESLLY LKLERDMQEG FGSEGYFPYF DWMPNSKRIV FWTGGKFHSI DVKTQAVKDI PVSVKATVKY ADAVRFDVDV APEKFAVKMA RWAQKSPNGQ NIVFQALGKL YIKEIKSGKV KRLTRQNDHD EYYPRYSHDG KKIVFTTWND KDLGSVRTVS ASGRSEKVIS KEPGHFIEPS FSTDDKLITY NKKTGGYLLA PEYSVEPGIY TATVKGEKHR RVAKNGSAPH FAGDNSRVYF TESVSGSDYP EQQLVSVDLN GEDKREHLYG GDKIAEYRLS PDKKWIAFVY QYKAYVAPFT EIGQKQDIGP KSTTIPIKQL SDRAGEYLTW RSDSQAISWY HAATYYEREL KEAFAFVPGA AEDLPDPVTE GMSLSFEQKT DKPSGYKALV GGTVVTMRDA NNQQEIIEDA VVVIKDNKIV EVGKRADITI PNNALKIDTT GKTILPGLID AHAHGSQGSN EIIPEQNWNM YSALAFGVTT IHDPSNDTSE IFAASELQKA GKRVAPRTYS TGTIIYGAEA LGYKAIINSY EDALTHLRRL KDAGAISVKS YNQPRRDQRQ QILAAARELN LMVVPEGGGK YQQNISMLVD GHTGLEHSLP IARGYQDLTA LWVETEFGYT PTFVVSYGGL MGEEYWYDRT EVWKNERLLR YTPSFLLDRR AIRRPTAPDN QYNHVFVAQY AKTLRDKGVS VHIGAHGQRE GLAAHWELWL MTQGGFTPWE ALRGGTIDGA THLGMGKQLG SIEAGKLADM MIIDGDVLTD IRRSEYVTYT VINGRIYDAA TMNEVGSKTK RPAFFFENNN TLFMPEATQQ SIQQKSEKHH WVH
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