| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0414 |
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| Symbol | |
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| ID | 4173803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 486270 |
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| End bp | 488621 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638053417 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_659998 |
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| Protein GI | 109896743 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAA TAACATCCTC TATTTTTACC GTTAGTAAGC TAGCCCTTCT TGTTGCAGGG
GTTATTGGAA CGAATGCTTA CGGGCAGACG TCACGTAATC AGCATCAAAT CGAAGAAATT
ACCGTGACGG CGCAAAAACG CGATCAGTCA ATTCAAGATG TGCCTGTCAG TATCAGTGCC
TACGATGGTG CGTTGCTTGA GAGTTTAGGG GTTGCCGAGC TCGACACCTT ATCCGAAATA
ACCCCTGGTT TGGTGATTCA AGAACAAAGC CCGAACAACC CGGGTTTCGT TATTCGGGGG
ATTACCTCAG ACAGTGGTTC GTCACAGGCG GCGCCTCGTG TGTCGATTTA CTATAACGGT
GCTGACGTAT CCCGCTCTCG GGGCTCGTAT TTTGAATTGT TTGATATAGA GCGTATTGAA
GTGGTTAAAG GCCCGCAAGC GACCCTGTTT GGCACGGCAG CATCAGTGGG GGCGTTAAGT
GTTATCACCC GTAAACCCCA AGAAGAATTC GGTGCAGAAA TAAAGGCCAG TGTGGGCAAT
TATTCAGCTG AAACCCTCAG TGGGTTCGTG ACTGGCGGCA ATAGCCAAGT GCAGGGGCGA
TTGGCCTTTA GCTATCGCCA GCGTGATGGT TTCATTCGTA ATATTGCAGG GGAAGCGGGT
TCGCAAAACC CTGACGGATT CGATCAGGAA GACATGCATG GTATTGAGCG CACAGCGTTT
CGCCCGTCGC TACGTTTTAC ACCCAGTGAT GAGCTGACCA TAGACTTAGT TTATACCCAC
GAAAAAAATG ACGACACGGG AACATCGTTT AAAAATGGCT TATTTGCACC CACTGGTGGC
GATACCAGCG CATTTAGTTT TGTGGAAATG TCAGGTAGTC CATTATCCCA AGAGGTGTTT
GGCCGCAAAG ATTTGGGCGT AGAACGCACC GTTGACGATC TGAACCTAAC GGTTAATTGG
GACATTAACC AAGACTTAAC GTTTACCTCA ATTTCCGCTT CTCGTCGCTT TGATTCACTG
GAAGTATTTG ATGCCGATGG CACGCAAGCG TGGTTCTTAG AATTTGCTGA AGATGCCACT
GGCGATCAAT TCAGCCAAGA ATTTCGCATG ATTCATCAAG GTGACAAACT GACTACTATC
GCCGGTGTGA GCTATTTCAC CGAAGACGGT AGTCAAGCAG TGCCATTTAG CTCAGAGGAA
TCTGTCTTTT TGAACTGCCT AGGGGCCTTT GCTGCTCTTG CGCAGCCATG CGTAGCAAAC
GATGGCTCTG TTCCTGTGCT CACGCCCATT TTAACTGAAG GGGCTGCTCA GCTTTTGCCG
TATCGTTTAG AGTTTGAAAA CTACGGCGAG ACCGATGCTT ACTCGGCGTT CGCTGATGTG
ACTTATGCCG TGAATGAGGC GCTAGAGCTA ACCGCCGGTT TACGCTATGT GCGTGAAGAC
AAAAAAAGTG GTTATCGCTC AGATGCGCCT GCAAGTGTAT TAACTGGCAG TGAACTGTTT
ACCGTGGACA CAGAAGGTCA GATTTTCCGT GCTGAAGAAG ACTACGATGA TTGGTTGCCA
CGCTTTAATA TGTTGTACGT CTTAAATGAA GACATCAATA TGTACGCGAC CATTTCTAAA
GGTCGCCGCT CTGATGTGTT GAATGTGACG TCAGTTCGCG GGGAAGATGG CTCGGGTGAG
AAGTCTGTTA CTGAAATCCC AGCTGAGATC ATCTGGAACT ACGAAGCGGG CATCAAAGGA
CAAGCGTTCG ATAAATCTGT GAATTATAAC GCCTCGGTGT TTTATCAAGA CTATTCAAAT
TTCCAAGTTA CTTTGTTAGA TGACGAGGGC GTGGCATATG CCGCAGATGC TGGCTCGGCG
ACCAATGTTG GCGCTGAAGC AGAAGTGCGT GCCCTGTTAG GTGCTGATTT TGAGCTATTC
GCTAATCTAG CTTATTTAGA TGCAACCATA GACGACGACA GCACAAACGG TGACCTAGCG
GGCAATCGCT TTCGCTTGCA GCCGGAATGG ACAGCCAGTG TCGGCATGTT CTACGCGACT
GCACTTTCGC AAGGTTATAA CCTAACGAGT TCTTTAGTGT ACAGCTACCG CTCAGACGTG
TTCTTTGAAC CGGCGAATGC ACCAATATCA GGTTTAGACA TCAGTGAAGA TTCCGTCAGC
TTAGTCAGTG CCCGCATCGG TATTGCAGGT GCGGATGAAG ATTGGGCAGT AAACTTGTTT
GCCAGTAACT TGCTTGATAA AGAATATCTA GTGGACGCAG GTAATACCGG TGGCGGCTTT
GGCAACCCAA CTTTTGTCGC GGGGGCCCCA CGCTTTTACG GCATCGAGTT CAAAATGCGT
TTTGGCGAGT AG
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| Protein sequence | MTTITSSIFT VSKLALLVAG VIGTNAYGQT SRNQHQIEEI TVTAQKRDQS IQDVPVSISA
YDGALLESLG VAELDTLSEI TPGLVIQEQS PNNPGFVIRG ITSDSGSSQA APRVSIYYNG
ADVSRSRGSY FELFDIERIE VVKGPQATLF GTAASVGALS VITRKPQEEF GAEIKASVGN
YSAETLSGFV TGGNSQVQGR LAFSYRQRDG FIRNIAGEAG SQNPDGFDQE DMHGIERTAF
RPSLRFTPSD ELTIDLVYTH EKNDDTGTSF KNGLFAPTGG DTSAFSFVEM SGSPLSQEVF
GRKDLGVERT VDDLNLTVNW DINQDLTFTS ISASRRFDSL EVFDADGTQA WFLEFAEDAT
GDQFSQEFRM IHQGDKLTTI AGVSYFTEDG SQAVPFSSEE SVFLNCLGAF AALAQPCVAN
DGSVPVLTPI LTEGAAQLLP YRLEFENYGE TDAYSAFADV TYAVNEALEL TAGLRYVRED
KKSGYRSDAP ASVLTGSELF TVDTEGQIFR AEEDYDDWLP RFNMLYVLNE DINMYATISK
GRRSDVLNVT SVRGEDGSGE KSVTEIPAEI IWNYEAGIKG QAFDKSVNYN ASVFYQDYSN
FQVTLLDDEG VAYAADAGSA TNVGAEAEVR ALLGADFELF ANLAYLDATI DDDSTNGDLA
GNRFRLQPEW TASVGMFYAT ALSQGYNLTS SLVYSYRSDV FFEPANAPIS GLDISEDSVS
LVSARIGIAG ADEDWAVNLF ASNLLDKEYL VDAGNTGGGF GNPTFVAGAP RFYGIEFKMR
FGE
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