| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0393 |
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| Symbol | |
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| ID | 4173483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 447940 |
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| End bp | 449061 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053391 |
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| Product | putative ABC transporter solute-binding protein |
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| Protein accession | YP_659977 |
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| Protein GI | 109896722 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.235452 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGATAG GAAATGACGC GTTAAACGAC CTTAAGGGTA ATCAAGCTAG CCCGCGCGAA
AGCAGCAAGC AGTGGCAGCA AACCTTAGCC ACTGCCCGCG GCGAAACAGT GTACTTTTAT
GCTTGGGGTG GCTCAAAACC CGTCAATAAC TATTTACGCT GGGCAGCCCG GGAAATTGCC
AGTCGCTATC AGGTACGTTT GCGTCACGTT AAAGTAGCCG ATATCAGCGA AGCGGTTAGT
AGGTTAAAAG CAGAAGATGG CAGCAAAAGT GCTATCGATT TGCTGTGGAT AAATGGTGAA
AACTTTAGCT ACCTAAAAGA ACAAGAATTG TTATTAGGGG GGCTGACAAA CGCCGTCCCC
AATAGTGCAC TGCTGGCTAC TGAGCAGCTG TCGTTGGGCA ACGACTTTGG TGTCCCTATG
GATGGCTTCG AAATACCTTG GGGCGTAGGG CAATTCAATA TTATTGCCAA TGAAAACGCC
TTTGCTCAGA TAAGCATTAC CCCAGCTGAT ATTCTTAGCG CAGCGAAGCA ACAACCCGGC
CGCATGAGTT ACCCGCGCCC GCCTGAATTT CATGGCACTA CTTTTTTGAA ACAGCTTTTA
GTGGCGCTTA GTCATAATGA TAAACGTTTA TTCGAGCTTG CTACACCTGA ATCCCAGCAG
CAGTTGCTGC CTGCATTATG GGATTACCTT GATAAACTGC ACCCACTATT ATGGCAAAAA
GGCAGTGCAT TCCCTAGCTC AAACACAGAG CAACTGGCAC TTTTTCAACA AGATCAACAG
ACAATCGCCG TTAGTTTTAA CCCCAATCAA ATAAGCAAAG AGCAAGATGA AATGCGCATT
CCTCAATCTG CAAAACGCGT GTACTTTGCG GGCGGCGCTA TTACTAACAG CCATAACCTT
GCCATTCCCA AAGGGGCGCA AAGTCCAGCA GGCGCGAAAG TGGTGATCCA TTTTCTATTG
AGCGAGTTAG CCCAAGAGCG CAAGCTTAAT GGTACCTGGG GGGACCCTGC AGTCATAACG
CCATTACTGG ATAAAGCCTC AACATTACCC TCTCAGCAAG AGTTACACAG TTCTTGGCAA
CAAATCATTG AAGATACATG GCAACAACGA TACGGCGCTT AA
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| Protein sequence | MAIGNDALND LKGNQASPRE SSKQWQQTLA TARGETVYFY AWGGSKPVNN YLRWAAREIA
SRYQVRLRHV KVADISEAVS RLKAEDGSKS AIDLLWINGE NFSYLKEQEL LLGGLTNAVP
NSALLATEQL SLGNDFGVPM DGFEIPWGVG QFNIIANENA FAQISITPAD ILSAAKQQPG
RMSYPRPPEF HGTTFLKQLL VALSHNDKRL FELATPESQQ QLLPALWDYL DKLHPLLWQK
GSAFPSSNTE QLALFQQDQQ TIAVSFNPNQ ISKEQDEMRI PQSAKRVYFA GGAITNSHNL
AIPKGAQSPA GAKVVIHFLL SELAQERKLN GTWGDPAVIT PLLDKASTLP SQQELHSSWQ
QIIEDTWQQR YGA
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