| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0377 |
|---|
| Symbol | |
|---|
| ID | 4173467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 429709 |
|---|
| End bp | 432060 |
|---|
| Gene Length | 2352 bp |
|---|
| Protein Length | 783 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053375 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_659961 |
|---|
| Protein GI | 109896706 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGCCC AATTTAAATT ATTATTGTTA GCTACATCTA TAGCCAGCGT TTTTAATCCT
TTATCCCTTA ATGCGCAAGA AAAAAGCACG GATACTAAAC AAGAAATAAC TGAAACAGAA
GAGTCACAAG GCATTGAAGT GATAATGGTT TCTGCGACTA AGCGGTCTGA GAGCGTGCAA
GATATTCCAC TTTCAGTCAC CGCTTTTTCG CAGCAACAAC TTGATATCAA AGGTGCTTCA
TCGCTTACGG GCATTCAAGA GTCTACACCC AATCTAAATT TCTCGGTGCA ATCAGCTGGG
CAAAACGTGG CGCGCGTTAC ATTGCGTGGT GTCGGTACTG AAACCTTAGT CGGTGGCGGA
GACCCCGGCG TTGCGCTGCA CATTGACGGC ATTTACGTTG GGCGAAATTC AGCGGCTGCC
GCTGACGTAT TTGATGTAGA CAGACTAGAA GTGTTGCGCG GTCCGCAGGG CACTCTATAT
GGACGAAATG CCACGGGTGG CTCTGTCAAT ATCATTACTA AAAAGCCAAC TGACGAGCTT
GAAGGCTCAG CTGATTTAAC CTACGGCAAC TACAACGAAG CGCGCGTACG CGGCGTAATC
AATGTGCCCT TGAGTGACAA CCTGTATTCG CGCATAACTA TGCTGTCAGA GAGTCACGAT
GGTTATATTA AAAATTTATA TGAAGGCGGC CGAGATGTGG ACGATAAAGA CAGCCAGAGC
GGTCGCGCAC AGCTACTTTA TTTAGCCGAC TCTGGGGATG AATATTTACT TAGAGGCTAC
TACTCAAAAA CTGGAGGCGC AGGCCCAGGT TCGCAATATT TAGGCACGGA TATAAACACA
GAAAACGGCT ATCCCTCGGC GTATCTAATT GGGGTGTCTA GTGCAGGAGT CGGTGGTGCT
GTATTAGCGG ACGCATTTGG ATTGGCGACC ACGGCGACAG GAGACTCAGT TTTACCATTA
CCTACAGATC TTCACGAAGT CAGAAAAGAT GCTCCTGAGT TTACTGATAC CTTAATTCAG
GGGATTGATT TTGATGCTAG CATCAATCTT TCCGACACCT TATTGCTTAA ATCTATTACC
TCTTATCAAA CCAATGATAA TCAGATATTA GTAGATGCGG ACAGCTCAGA GTTACCCCTT
GAAACTCGTA ACCGTAACAA CATGGCTAAA CAATACAGCC AAGAATTCAA TTTAATTTCT
CAAACTCTTG GCCCTTTTCA ATGGATATTA GGTGCCTACT ATTACCATGA AGAATTAACC
GAGCGCTTTG AAGTCATTAC CCCTTCTGGG CTAGTGCCTA TCGATACACA ATTAGGCGAA
GGGGCTGTCG CTGGAGGGGG CGGCATAACA CAGTTACGTA TTGCCAGCCA TGAGGTTGAT
TCAACAGCGT TATTTGCTCA GCTTTCTTAT GAGTTAAATG ATGAGTGGTC GGTAACAGGC
GGGCTACGCT ACACCCGCGA CGAAAAAACA CAATCCAGGG AAATAGGCGG CCAGGTCGAT
ATTACTAACA ATGTTCAGTT TTTGAGCGGT GATATCGGGC CATTAGGGCC TGACAGCGGG
ACCACTTCTT TTACCGAACC GACGTATCGT ATCAGTACTG ATTATGAACT GAGCCCAGAC
AATTTGTTAT TTGCTAGCTA TGCCCATGGT TATAAATCGG GAGGTTATGA TCTCAACGGT
GGTGAGGTTA CAGATGAAGG TGAGCAAGTG CCTTACGAGC CTGAGTTTGT TAACGCGATT
GAAATAGGCT CGAAGAACAA GTTCTTCAAT AACAAGATGA TACTCAACTT AACGGCTTTT
CGTTATGACT ATGAAGACTT ACAGGTGTTT CGACTGTTAG CAACCGGGCC GGTTACCGAT
AACGCAGCCC AGTCAACGAT CCAAGGTGTT GAGCTGGAGC TCAAAATTGA GCCCACAGAT
AATGTTAAGT TTGATGGCTC AGTAGGCTAT TTGGATGCCA CATACGATGA GTATTCTATT
GATATCCCGC CAACTGACTT TTCCGGTAAT CGCTTGAACT ACGCCCCTGA ATGGACCGGC
CACATGGGCG CAGAATATGT AAAAACCATA GGTGAGGGCG ACCTAATTAC TCGAGTTGAT
TGGTCATACC GTTCAGACAC TTACTTCGAC CGTGCAAACA CGGACCTAGA CATGCAAGAA
GCTTATAGCT TGTTCAACGC GCGCGTACGT TATGACACCG AGAAATACTA CATCGATCTG
TGGGCTAAAA ACCTAACCAA CGAAGACTAC GTGACGGGTC AGGTGATCAA CCCGCCATTT
ACCTGTGGTT GTCGTACGGT GAACGTGGGG GCGCCTAGAA CGTATGGGGT CACAGTCGGC
GCGCGTTTCT AG
|
|---|
| Protein sequence | MKAQFKLLLL ATSIASVFNP LSLNAQEKST DTKQEITETE ESQGIEVIMV SATKRSESVQ
DIPLSVTAFS QQQLDIKGAS SLTGIQESTP NLNFSVQSAG QNVARVTLRG VGTETLVGGG
DPGVALHIDG IYVGRNSAAA ADVFDVDRLE VLRGPQGTLY GRNATGGSVN IITKKPTDEL
EGSADLTYGN YNEARVRGVI NVPLSDNLYS RITMLSESHD GYIKNLYEGG RDVDDKDSQS
GRAQLLYLAD SGDEYLLRGY YSKTGGAGPG SQYLGTDINT ENGYPSAYLI GVSSAGVGGA
VLADAFGLAT TATGDSVLPL PTDLHEVRKD APEFTDTLIQ GIDFDASINL SDTLLLKSIT
SYQTNDNQIL VDADSSELPL ETRNRNNMAK QYSQEFNLIS QTLGPFQWIL GAYYYHEELT
ERFEVITPSG LVPIDTQLGE GAVAGGGGIT QLRIASHEVD STALFAQLSY ELNDEWSVTG
GLRYTRDEKT QSREIGGQVD ITNNVQFLSG DIGPLGPDSG TTSFTEPTYR ISTDYELSPD
NLLFASYAHG YKSGGYDLNG GEVTDEGEQV PYEPEFVNAI EIGSKNKFFN NKMILNLTAF
RYDYEDLQVF RLLATGPVTD NAAQSTIQGV ELELKIEPTD NVKFDGSVGY LDATYDEYSI
DIPPTDFSGN RLNYAPEWTG HMGAEYVKTI GEGDLITRVD WSYRSDTYFD RANTDLDMQE
AYSLFNARVR YDTEKYYIDL WAKNLTNEDY VTGQVINPPF TCGCRTVNVG APRTYGVTVG
ARF
|
|---|
| |