Gene Patl_0334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0334 
Symbol 
ID4173157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp389502 
End bp391949 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content48% 
IMG OID638053333 
ProductTonB-dependent receptor 
Protein accessionYP_659919 
Protein GI109896664 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.17894e-05 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATGA CACCTATTGC CTGTGCAGTT TCGATACTTT TTGCCACCCC ATTAATGGCC 
CAAGAAGCAA ATACGGAAAC CCCTGACAAT GATGAGTATG AAAATATTAT TGTTACCGGT
TCTAGTGTTG CACGTACTGA AGCAGACACC CCAGCCAAAA CGACCTTGAT TGGTAAAGAC
CAAATCGCCA ACACAGGGTT TTCGAGTCAA GCTGACATAC TCATGAGTGT TCCCGGTATT
AAAGTAGAGG GGGGCGGGGG TGAAGTCGCA ACCAACGCAT TCGTTCGTGG TTTACCTTCT
GGTGGTCAAT TTCAGTTTAC TCCCCTTAAT TACGACGGCA TGCCGGCATT CCAATCTGGC
ATGACATCGT CAGCACAAGA TGTTTACTAC CGTCCTGACA TCGGCATAGA AAGAGTCGAG
TACGTGGGTG GTGGTGTGTC TAACTTGTTT GGCCCAGGTT CAGTGGCCGG CATTATCAAC
TATATTTCGC GTACGGGCAG TGACGATCCA GAAACCACAG TGCAGGTCGA AATCGCCGAA
GAAGGCCGAG TTAGAACAGA CTTCTATAAT AGCGGCGCGT TATCCAGTGA TGAAAACTTG
TATTACGCGA TCTCTGGTTT CTATCGTTAC GATGAAGGCC CGTTAGAAAC AGGCTTAGAA
ACCAAGGGTT ACCAGCTTAG AGGTAACATT CGTAAAGAAT TCGACGATGG CCATATTACC
TTCCACGGTC AAATGATTGA TGACCAAGTG CAGTTTTTCC TTCCTTTACC CCTTGAAGGT
GACAGCCGCG AGCGTTTAAC CGGTAATGAT GGCGAAACCG TCTATGTGGC ACAAACCGTT
GCCGCAGCCG ATTTACGTTA CGACACAGCC GATGGCACCT ATGAATCACC TATTCGAAAT
GGTGTGCTCA CAGAGGGTGG TTCATTCGGT GTTGATTTTG AGAAAGAGTT AACTGACAAC
TGGCGCTTAG CGGGTAAGGC AAAAGTCGCC AGCTATGACC ACCAGTTCAA CCTATTCTTG
GATGGCGACG GCATTGCCAA CACGCCAGAG ACGCAAGAAG GTTACGCGAA TAACCTAGGT
CGCACCGCAA ACGGTGACGT TTTAAGCTCA CTAGGCAGCG CTAACTATAC ATGGTCTGAA
ACCGGCAATG CGTTACCAGA AGATTACTTG TTATTCGGTA ACCGCTTATT AGATCGCCAG
CGCGACGGTG ATTTCTTCAG TACTGAATTC AACTTAACAG GTGACATAGA GGCAGGCGGA
TTCGACCATA CCGTGAATAT CGGTACCTTC TTCATCAACT CATCGCAGAT GGATTACAAC
ATTATCTCCA GCTATTTAGC CGATTTTAGC AATGGCGACA GCGCGCGCTT GGTTGACTTG
TCTTTCACCA ATGAAGCGGG TGATACAGTG CAATATTCGA AAAACGGTAT TGTCGGGCCA
GGCACAAGTT ACACCAATAA AGATTTAACC AGTAAGCGTA TGGCGTTTTA CGTAACGGAC
CAGATGGAAA ATGACCAATG GGCACTCGAC GTCGGTATGC GTGTTGAACG TGCTGAAGGG
ACAACTAAAT CTGAAGGCAG TGAAGTGGTT GTGGTAAATG ACGACCCATC ATTAGCACCG
AACTTACAAG TTAACACCAC AGGTAACGGG CGTTTTACTT ACGGTGAAGT GGCTACAACC
GAAGCGGCAT TCTCGGCGGC TGTGTTGTAC AAAATGGATG ATCAAGACCT GAACCTATAC
GCGAATGCGT CAACCGGTTA TTTCTTCCCG CAAATCAGAA GTATCACGTT TAACGAAAAC
GGTGAGCCAC AAAGCTACGA GGGCGAAGAT ATTACCCTGG GCGCGATTGG TTTTAAGTAT
TTCCCAGAAG ATTTATACAT AGATGCGTCA TTGTTCATAG CGAACTTGGA TAATCGCCGT
TCAGTGGACT TCGAAAATGA TGGCTCAGGC GGATTACTAG AAGTGGTGAA GCAGCAATCA
ACGGAAACCA CAGGCGCTGA AGTGATTACT CGCTGGAATA TGACAGACGA AGTGATCCTT
GAAGGTAACG TGACCTATCA AGACGCTGAA TTTAGCGAAG GCGGTAACGT AGGTAAGCAA
CCAAGAAGAC AGCCTGAGTT CTCGGGTAAT CTTGCGGTTT CTTATAACAA TGGCTTTGTT
GATGCGCGCT TAGGTTTGAG TTACTTCGGT GATGCTTACG CGAACGACGA TAACTCAGTC
GAACTGGATA GCCACACTAT TGCGACCTTA AGTGCCGGTT ATTCTTGGGA GCTAAATAAC
GATCAGCAAA TTCGTGTCGG CGTCAGTGTG TGGAACTTGT TCGACACTGA CGGCATTACC
GAAGGCTCAC CTCGTCAAGG TAACAGCCAA GTGTCGGGTG GCGAGTTCTT CGTGGGCCGC
CCAGTGCTAC CACGCAGAGT GAGCTTAACA GCACGATATG ATTTCTAA
 
Protein sequence
MKMTPIACAV SILFATPLMA QEANTETPDN DEYENIIVTG SSVARTEADT PAKTTLIGKD 
QIANTGFSSQ ADILMSVPGI KVEGGGGEVA TNAFVRGLPS GGQFQFTPLN YDGMPAFQSG
MTSSAQDVYY RPDIGIERVE YVGGGVSNLF GPGSVAGIIN YISRTGSDDP ETTVQVEIAE
EGRVRTDFYN SGALSSDENL YYAISGFYRY DEGPLETGLE TKGYQLRGNI RKEFDDGHIT
FHGQMIDDQV QFFLPLPLEG DSRERLTGND GETVYVAQTV AAADLRYDTA DGTYESPIRN
GVLTEGGSFG VDFEKELTDN WRLAGKAKVA SYDHQFNLFL DGDGIANTPE TQEGYANNLG
RTANGDVLSS LGSANYTWSE TGNALPEDYL LFGNRLLDRQ RDGDFFSTEF NLTGDIEAGG
FDHTVNIGTF FINSSQMDYN IISSYLADFS NGDSARLVDL SFTNEAGDTV QYSKNGIVGP
GTSYTNKDLT SKRMAFYVTD QMENDQWALD VGMRVERAEG TTKSEGSEVV VVNDDPSLAP
NLQVNTTGNG RFTYGEVATT EAAFSAAVLY KMDDQDLNLY ANASTGYFFP QIRSITFNEN
GEPQSYEGED ITLGAIGFKY FPEDLYIDAS LFIANLDNRR SVDFENDGSG GLLEVVKQQS
TETTGAEVIT RWNMTDEVIL EGNVTYQDAE FSEGGNVGKQ PRRQPEFSGN LAVSYNNGFV
DARLGLSYFG DAYANDDNSV ELDSHTIATL SAGYSWELNN DQQIRVGVSV WNLFDTDGIT
EGSPRQGNSQ VSGGEFFVGR PVLPRRVSLT ARYDF