| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0311 |
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| Symbol | |
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| ID | 4172905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 359646 |
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| End bp | 361739 |
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| Gene Length | 2094 bp |
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| Protein Length | 697 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053310 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_659897 |
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| Protein GI | 109896642 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000107098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTGT ACAACCTATT TAGCTTGTCT TTATTCACCC TCGCCATGCA AGCTCAGGCG
CAAGAAGCGA CAGATGCCAC TGAAGTCAAG CAAGCAGATG CAGAGGTTGA ACACTTACTT
ATTTCCGGTG TACGTCAAGA TAGGATCAGC GGGGGTGCGA CCGGTCTAAC AATGAATATA
AGCGAAACGC CTCAATCGAT TAGCGTTATC ACGTCAGACT TGATGGACAA TTTCGCCGCC
TTTAACATTA ACGATGCTCT ACGGTTAGCC ACAGGCGTGA CAGTAGAAGC CTGGGAAACC
AACCGTACTA ATTACTCCTC TCGTGGCTTT GAAATCAAAA ACACCCAAAT TGACGGTGTG
GGTTTACCGA ATGACTGGGG CATAGTGACA GGGGCCATTG ACGCCTACGG TTACGAAAGT
ATTGAAGTTA TTCGTGGTGC CAATGGTTTG CTGACGGGTG TAGGTAACGC ATCGGGCACA
ATCAACTATG TACGCAAACG CCCCACGAAT GAAACAGGCG GCGAAGTCAG TGTTATCGCT
GGCTCCTATG ATTTCAAACG TATTCAAGCC GACTACAACA CCCTGCTCAC AGAAGATGGA
CGCTGGGCTG CCCGGTTTGT GGTGGCTGGC GAGGACACCA ACTCCCATTT AGATGGATTA
TCAGATAACT TAGGTTATTT CTACGGCGTG GTTGATGGTC AGCTAACGGA TCACTCTACT
CTTACTGTCG GGATATCTCA TCAAGACGCC AATACTGATG GCAATTTGTG GGGCGGCTTG
GTATTCAATT ATACAGACGG TACCCAAGCT GAGTGGGACG ACAGCGATTC CACCACACAA
GACTGGACCA TGTGGGACAC CCAAAATACT AACGCCTTTG TAGAGTTCAC CAGTCAACTC
AGTGACAATT GGCGTCTTGA TGTGAACTAT CACAAACGCT ATTTCGAAGA ACAAGATAAG
CTGTTTTATG CCTATGGCAC CATCGACAAA GAGACGAACT TAGGACTTTT AGGTTATCCC
GGTCGTTATG ACTCAGATAT CGATTCCGAT TTACTTGAAG TAAAAACATC AGGTTTTTTT
AGTGCATTTG GCTTTGAACA TGAAGCGACA TTTGGTGTTA GCTATGCCCA AAGTACGGAC
ACTATGTTTA ACTACGCAGC CGATTTTACC GAAGCCGCAT GGGGTGCATT ACCAGCATTT
CCTTATGCCC TTGACGCTAT CGCCGAGCCT GATTGGCAAG AGCGCACACT GTATTCAGAA
ATTAAGCAAA ACCTAACCCG CGTATTCGGC TCAACCAAAA TTACATTAAG TGATAGCCTG
TTTATGATTG CCGGTGTAAA TGCCATTGAT TTTGAGCGAA GTGGCGATAA CAGTGGTACC
ACTATCGATA ATAGCGAAAG TGAGCTAAGT CCATATGTCG GCTTTACCTA TGCCATAACA
GAAGACATCA ATGCCTACGC TAGTTACTCA GATATCTACC AGCCCCAAGA ACAGTATGAT
TTATCGGGGC AATACCTTGA CCCAACTAAG GGCAAGAATA CCGAAGCTGG TATTAAAGTT
CAGTGGCTAG ATGAGAGCCT ACTAACTACG TTTGCTTATT TTACCGCGGA GCAAGAAAAC
CTAGCCTCAT ATGCAGGTAT CAATCCTGAT AACGGGCAAT ATTACTACAA CGGCATTGAT
GTTGACTCAA AAGGCTTTGA GATTGAAATG ACAGGTCAGC TCACAGACGA TCTCAGTGTG
ATTTTGGGCT ATACCGCCAT TGAAATTGAA GACGACCAAG GTGCTGATGC CAATACTTGG
GCACCTCGTG ACTACGTTAA TTTCTCATTG AATTACACAG TGCCCGTAGT GCCAAGCCTA
ACAGTCGGTG TCAGTGGTCG CTGGCAATCA GAAACCAAAA ACACTGATTA CAACGTCACC
CAAGACAGCT ACTTTTTGCT AAACGCCTAT GCCAGTTACG ACATTACCAA TGACCTCAGC
GTTAGAGCGA ATTTGAATAA TATCACTGAC GAAAAATACC TTAGCAGCCT GCACAGCTCG
TTTTTCTATG CCGCGCCTAT TAACGGCACA GTCAGCGTGA CCTACAGCTT CTAA
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| Protein sequence | MKLYNLFSLS LFTLAMQAQA QEATDATEVK QADAEVEHLL ISGVRQDRIS GGATGLTMNI
SETPQSISVI TSDLMDNFAA FNINDALRLA TGVTVEAWET NRTNYSSRGF EIKNTQIDGV
GLPNDWGIVT GAIDAYGYES IEVIRGANGL LTGVGNASGT INYVRKRPTN ETGGEVSVIA
GSYDFKRIQA DYNTLLTEDG RWAARFVVAG EDTNSHLDGL SDNLGYFYGV VDGQLTDHST
LTVGISHQDA NTDGNLWGGL VFNYTDGTQA EWDDSDSTTQ DWTMWDTQNT NAFVEFTSQL
SDNWRLDVNY HKRYFEEQDK LFYAYGTIDK ETNLGLLGYP GRYDSDIDSD LLEVKTSGFF
SAFGFEHEAT FGVSYAQSTD TMFNYAADFT EAAWGALPAF PYALDAIAEP DWQERTLYSE
IKQNLTRVFG STKITLSDSL FMIAGVNAID FERSGDNSGT TIDNSESELS PYVGFTYAIT
EDINAYASYS DIYQPQEQYD LSGQYLDPTK GKNTEAGIKV QWLDESLLTT FAYFTAEQEN
LASYAGINPD NGQYYYNGID VDSKGFEIEM TGQLTDDLSV ILGYTAIEIE DDQGADANTW
APRDYVNFSL NYTVPVVPSL TVGVSGRWQS ETKNTDYNVT QDSYFLLNAY ASYDITNDLS
VRANLNNITD EKYLSSLHSS FFYAAPINGT VSVTYSF
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