| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0293 |
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| Symbol | |
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| ID | 4172926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 341181 |
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| End bp | 343094 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053292 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_659879 |
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| Protein GI | 109896624 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0308209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATTGTCG CTTTACTCCT TTTTGCGTTG ATCTCCCCTG AATTTGCAGA CCAAACCTTT
TCACAGGTGC AATCTACTAT CGTTGATAAC GGCAGTTGGT TTTATGTATT GACCGTGGCG
AGCATTTTGA TGTTTGTGTT GTACTTGGCG GTATCACGCC ATAGCCAGGT CAAACTTGGG
CCAGACCATT CAGAGCCTGA CTATTCCTTT ATTTCTTGGC TTTCCATGTT GTTTGCTGCG
GGTATGGGCA TAGGGTTGAT GTTTTTCGGC GTGGCTGAGC CATTGATGCA CTTTTTAGCC
CCACCCACGG CACCCCCCAG CACCATTGAG GCTGCGCGTG AAGCGATGAA AATGACGTTC
TTCCATTGGG GACTGCATGC TTGGGCCATA TACGCTGTAG TCGCGCTCAT TCTAGCCTAT
TTCAGTTACC GCCACGATTT ACCTCTGACC TTACGTTCAG CCCTGTACCC TATTATTGGT
GAGAAAATTT ATGGCTGGCG GGGGAATGTA GTCGATATTT TTGCCGTCAT CAGTACTATT
TTTGGTGTCG CCACGTCTTT GGGCTTAGGG GTCACGCAAA TTAGCTCAGG TCTTAATTAC
TTGTTTGGCT TTCCGGTGTC AGAAGGCTAT CAACTACTAT TAATTTCTGC CATTACGGGT
TTGGCGATTG TGTCTGTTGT CAGTGGTTTA GATAAGGGAA TACGTATGTT ATCTGAACTC
AATATGCTTC TGGCTGTGGG CTTATTGTTG TTTATTTTAT TGGTCGGCCC GACGGTGTTT
TTGCTACAAG CGATGCTGCA AAATACTGGC GCATACCTGT CTGATTTAGT GCGTAATACC
TTTAACTTAT TTGCTTATGA TAAGAAAGAT TGGTTAGGCG GTTGGACCAT ATTTTACTGG
GGTTGGTGGT TAGCATGGGC ACCGTTTGTA GGGGTGTTTA TCGCGCGAAT TTCCAAGGGC
CGTACTATCC GCGAATTCCT GATTGGCGTG CTGTTGATCC CCTCAATGTT TACGCTCGCT
TGGATGACCA TTTTCGGTAA CAGCGCGATT GAGTTAGTAC TGAATCAGGG CAGCACAGAG
CTGGTCAAAT TAGCCACAGA TAACACGCCG GTGGCGCTGT TCTTATTCCT TGAGCACTTT
CCTTGGTCTA ACGTGATATC CGGTGTAGCA GTGCTGATGA TTGTGGTGTT CTTCGTGACC
TCTTGCGATT CAGGCGCAAT GGTGGTGGAT ATGTTGTGCT CGAACGGCCA AAATGACACC
CCAGTGTGGC AACGTATTTA CTGGGCGGGA GGCGTTGGTT TAGTGGCGGC TATTTTGTCA
ATGGCTGGCG GCTTGAGTGC CTTGCAAACC ATGACCATTG CTAGCGCTTT GCCGTTTGCG
GTGATATTAA TCATTGCTAT GTATGGCTTA ATCAAAGCCT TGCGGGTAGA GGAGTTTAAG
CGCGCAAGTA TGACCTTGCA TGCCCCTTCT GGACAAATTA ATGCGGGCAA CGACAGCTGG
AAAGAGCGTT TGCAAACCAT CGTCGACTTC CCAAATAAAA CAACTGTAGA GCGTTTTGTT
GAGCAAACGG TTAAACAGGC ATTTGATTCG GTGGCCCAAG AGTTAACCCT TAAACATATC
GAAGCAGAGA TCAGCCAATC AACAGAATCC GTGACACTAA CCGTTAAACA TGGCGAAGAC
GCCGAGTTTA TTTATGCGGT ATACCCAACT ATTCACCACA TGCCTGAGTA TAGCCAATCA
AGTGATTCGC AAGCAGAGGA CTCAGCTGAC GAGAATACTT ATTATCGGGC CGACGTACAT
TTAAGTGAAG GTGGGCAAAA CTACGACATC ATGGGCTGGT CTAAAGTCGC GGTTATCAAC
GATATTATCG ACCAGTATCA TCGCCATCTG CACTTTTTGC ATTTAGCGGG ATAG
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| Protein sequence | MIVALLLFAL ISPEFADQTF SQVQSTIVDN GSWFYVLTVA SILMFVLYLA VSRHSQVKLG
PDHSEPDYSF ISWLSMLFAA GMGIGLMFFG VAEPLMHFLA PPTAPPSTIE AAREAMKMTF
FHWGLHAWAI YAVVALILAY FSYRHDLPLT LRSALYPIIG EKIYGWRGNV VDIFAVISTI
FGVATSLGLG VTQISSGLNY LFGFPVSEGY QLLLISAITG LAIVSVVSGL DKGIRMLSEL
NMLLAVGLLL FILLVGPTVF LLQAMLQNTG AYLSDLVRNT FNLFAYDKKD WLGGWTIFYW
GWWLAWAPFV GVFIARISKG RTIREFLIGV LLIPSMFTLA WMTIFGNSAI ELVLNQGSTE
LVKLATDNTP VALFLFLEHF PWSNVISGVA VLMIVVFFVT SCDSGAMVVD MLCSNGQNDT
PVWQRIYWAG GVGLVAAILS MAGGLSALQT MTIASALPFA VILIIAMYGL IKALRVEEFK
RASMTLHAPS GQINAGNDSW KERLQTIVDF PNKTTVERFV EQTVKQAFDS VAQELTLKHI
EAEISQSTES VTLTVKHGED AEFIYAVYPT IHHMPEYSQS SDSQAEDSAD ENTYYRADVH
LSEGGQNYDI MGWSKVAVIN DIIDQYHRHL HFLHLAG
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