| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0270 |
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| Symbol | |
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| ID | 4171949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 317058 |
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| End bp | 318059 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638053269 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_659856 |
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| Protein GI | 109896601 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0169584 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGATTG GTCCTTACAA GCTTGAAAAC AATTTGATTC TGGCGCCTAT GGCAGGTGTG
ACAGATAGGC CTTTCCGGCA ATTATGCAAA CGCATGGGTG CAGGTTTGGT GGTATCTGAA
ATGCTGTCGT CTAATCCTGA TGTATGGCGG TCAAGTAAAT CCAAGCAACG TATGGATCAT
GTAGGCGAAA AAGGGATCCG CGCGGTTCAG ATTGCTGGCG CTGATCCATT ATTAATGGCT
CAAGCGGCAC AGTTTAACGT GGATAACGGT GCCCAAATTG TTGATATTAA CATGGGGTGT
CCGGCTAAGA AGGTAAATAA GAAGTTGGCG GGCTCTGCGT TATTGCAAGA TCCACAATTG
GTTGAGCGAA TAGTTCAATC TGTGGTCGAA GCGGTGCAGG TTCCGGTAAC GTTAAAAATA
CGCACAGGTT GGAATACGGA CAATCGCAAC GGGGTGCAAA TTGCAAAGAT CGCCGAACAA
AACGGCATTC AGTCTTTAGC AGTTCATGGT CGCACCCGGG CCTGTATGTA CAAAGGTAAC
GCTGAGTACG ACACCATTAA AGCCATTAAA CAGGCTGTGT CGATACCCGT CGTTGCCAAT
GGTGATATTA CCTGCGTGCA CAGTGCAAAA CACGTGTTGG AATACACCAA TGCAGATGCG
TTGATGATAG GCCGAGGTGC CCAAGGTAAC CCTTGGATAT TTCGCCAAAT TCAACATTTT
CTGCAAACTG GCGAAATACT GCCTTCGCCC CCATTAGGTG AAGTGCGCGA CGTATTATTA
GCGCACGTAG CCAATGTTCA CCAATTTTAC GGTGAATTTA AGGGAGCGCG GATAGCTCGC
AAACATGTGG GTTGGTATTT AGCGGAACAT GACCGTGAGC GGCAATTCCG AGCCAGGTTC
AATGCGATTG ATGATGCTGC AGAGCAACTT GATTCATTGG CACATTATTT TGACCACTTG
GCAGGCGAAC CTACGACTCA TCTCGTATCA CCTGCTGCCT AA
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| Protein sequence | MQIGPYKLEN NLILAPMAGV TDRPFRQLCK RMGAGLVVSE MLSSNPDVWR SSKSKQRMDH
VGEKGIRAVQ IAGADPLLMA QAAQFNVDNG AQIVDINMGC PAKKVNKKLA GSALLQDPQL
VERIVQSVVE AVQVPVTLKI RTGWNTDNRN GVQIAKIAEQ NGIQSLAVHG RTRACMYKGN
AEYDTIKAIK QAVSIPVVAN GDITCVHSAK HVLEYTNADA LMIGRGAQGN PWIFRQIQHF
LQTGEILPSP PLGEVRDVLL AHVANVHQFY GEFKGARIAR KHVGWYLAEH DRERQFRARF
NAIDDAAEQL DSLAHYFDHL AGEPTTHLVS PAA
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