Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0232 |
Symbol | |
ID | 4171719 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 275387 |
End bp | 276964 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638053231 |
Product | general secretory pathway protein E |
Protein accession | YP_659818 |
Protein GI | 109896563 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTCTG ATTCAACGAT CACAGAATCA ATAAGTACTG TGGAAGCCGA AGAGCAGGCC CTCGTTGCTG CGGGCACAGA TGTAGATGCC CCCATAGAAG ATGCTGAACA CAAGCAGCTT GCGTTCAGTT TCGCTAAGCG CCATAAAGTG CTGCTAGAAA CCGCGGAAAC GCCTGCACTG CTTTATCATA CCAATGAGAC AGACTTTGCT ATTTTTGCTG AAGTCAGGCG CTTTTTGGGG CAGCCTTTTC AATTGCGAGA AATTGAAAGC GGCCAGTTTG AAACGTTACT GACCAGCGCA TTTCAGCGCG ACTCGTCAGC GGCTAAACAG CTAATGGAAG ATATTGGCAA TGAAAGTGAT TTATTTGCGC TTGCCGAAGA GTTACCTGAC ACAGAAGACT TGTTAGAAAG TGAAGATGAT GCACCGATCA TCAAATTGAT TAACGCCATG TTGGGCGAAG CCATCAAAGA AGGCGCATCT GATATTCATA TTGAAACCTT TGAAACCCAG TTGTTGGTGC GCTTTAGGGT TGACGGTGTA TTACGAGAAA TTTTAAAACC GAATCGTAAG ATGGCTTCAA TGTTGGTGTC TCGTATTAAG GTTATGTCGA AAATGGACAT TGCCGAGAAG CGTGTTCCCC AAGATGGACG CATTACCTTA CGCATTGCCG GTCGAGCGGT TGATGTGCGG GTATCGACCA TGCCATCAAG CCACGGTGAG CGCGTGGTGC TGCGTTTGCT TGATAAGAAT AATGTACGCT TAAATCTTGA AGATCTAGGG ATGACCAAAG TTAACCGCGG GCATTTCTCC GGTCTTATTC GTAAGCCCCA TGGCATTATT TTGGTGACTG GCCCTACAGG TTCTGGTAAA TCCACAACCT TGTATGCGGG ATTAAGCGAA ATCAACTCAA AAGATCGTAA TATTCTTACC GTTGAAGACC CAATAGAATT TGATTTACAA GGCATAGGGC AAACCCAAGT CAATGCTAAA GTCGACATGA CATTCGCACG AGGCTTGAGG GCGATTTTAC GTCAGGATCC TGATGTGGTT ATGGTTGGGG AAATCCGAGA CTTAGAAACC GCGCAAATTG GTGTGCAAGC CAGTTTAACA GGCCATTTGG TGATGTCGAC ACTGCATACC AATACCGCTG CAGGGGCGAT TACGCGCTTG GAAGATATGG GCATAGAGCC ATTCTTGTTG TCGTCTAGTT TATTGGCTGT TTTATCACAG CGCTTAGTAA GAACCTTGTG CCCACAATGT AAAACCACCC ACGAACCTAG CGCCCAAGAG TGCAGTATTT TAGGTGTGGC TATTGGCAGC GAAGCCAGTC ATCAGGTGTG TCGACCTAAA GGTTGCGCGG CGTGCAACCA TACTGGTTAT CGCGGGCGTA CCGGTATTCA CGAATTATTG ATTGTCGATG AAGGCATACG CGAGCTGATC CATAACGGTC ACGGCGAGCA AGCTATTGAA AAATACATAC GTCAAAATAC GCCTAGCATT CGTGATGATG GTTGTCGAAA AGTCTTGAGC GGAGAAACTT CACTAGAAGA AGTCCTGCGT GTAACGCGAG AAGACTAG
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Protein sequence | MSSDSTITES ISTVEAEEQA LVAAGTDVDA PIEDAEHKQL AFSFAKRHKV LLETAETPAL LYHTNETDFA IFAEVRRFLG QPFQLREIES GQFETLLTSA FQRDSSAAKQ LMEDIGNESD LFALAEELPD TEDLLESEDD APIIKLINAM LGEAIKEGAS DIHIETFETQ LLVRFRVDGV LREILKPNRK MASMLVSRIK VMSKMDIAEK RVPQDGRITL RIAGRAVDVR VSTMPSSHGE RVVLRLLDKN NVRLNLEDLG MTKVNRGHFS GLIRKPHGII LVTGPTGSGK STTLYAGLSE INSKDRNILT VEDPIEFDLQ GIGQTQVNAK VDMTFARGLR AILRQDPDVV MVGEIRDLET AQIGVQASLT GHLVMSTLHT NTAAGAITRL EDMGIEPFLL SSSLLAVLSQ RLVRTLCPQC KTTHEPSAQE CSILGVAIGS EASHQVCRPK GCAACNHTGY RGRTGIHELL IVDEGIRELI HNGHGEQAIE KYIRQNTPSI RDDGCRKVLS GETSLEEVLR VTRED
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