Gene Patl_0202 details

Gene Information

• Locus tag: Patl_0202
• Symbol: fadA
• ID: 4171748
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 242580
• End bp: 243740
• Gene Length: 1161 bp
• Protein Length: 386 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 638053201
• Product: 3-ketoacyl-CoA thiolase
• Protein accession: YP_659788
• Protein GI: 109896533
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0183] Acetyl-CoA acetyltransferase
• TIGRFAM ID: [TIGR01930] acetyl-CoA acetyltransferases; [TIGR02445] fatty oxidation complex, beta subunit FadA

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0146484
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAAG TCGTAGTAGT CGATTGTATT CGTACCCCAA TGGGGCGCTC GAAAGGCGGT 
ATTTTCCGCA ATGTACGTGC TGAAACGTTA TCAGCGCACT TAATGAGTAA GCTGATAGAA 
CGTAACCCTA ATCTTGATCC AAACGAGATT GAAGACATCA TTTGGGGTTG TGTACAACAA 
ACCAAAGAGC AGGGGTTCAA CATCGCTCGT AATGCGCAGT TATTAACTGA CATTCCACGC 
AGTGTGGCTG CCGTAACGGT TAACCGTTTA TGTGGCTCAT CTATGCAAGC TTTGCATGAT 
GCAACAAGCG GCATCATGAG TGGCCGCGGT GATGTGTACA TGATTGGTGG TGTAGAGCAC 
ATGGGCCACG TACCCATGGA CTTCAACATC GACTTTCACC CAGGCATTGC TAAAACCGCA 
GCTCGAGCCT CAGGCAGCAT GGGCATGACC GCTGAATTGC TGGGACGTCA AAACGGTATC 
TCCCGTGAAA TGCAAGATGC ATTCGGCGCA CGTTCGCACC AAAAAGCTCA TGCGGCAGCT 
GTTGAAGGTC GCTGGAATGA AATCGTCGCC ACTGAAGGCC ATGACGCTGA CGGTATACTA 
AAACTGATTG ATGCAGATGA AACTATTCGT CCTGACTCAA CCACTGAAAG TATGTCTGGC 
TTGCGCCCAG TATTCGACCC AGTCAACGGC ACTGTAACGG CCGGTACATC TTCAGCGTTA 
TCAGATGGCG CATCAGCCAT GTTGATTATG TCTGCTGATA AAGCCAAAGC ACTCGGTTTA 
ACCCCACGTG CAAAAATTCG TGCTATGGCG GTTGCCGGTT GTGATGCCGC TATCATGGGC 
TTTGGCCCAG TTCCTGCGAC GCAAAAAGCC CTTAAACGTG CCGGCATGAC AATGGCTGAC 
ATCGAATTAG CTGAGTTTAA CGAAGCATTC GCAGCACAAG CCTTGTCATG TATTAAGCAG 
CTGGGTTGGT TGGATACTTA CGAAGACAAA GTAAACCTCA ATGGTGGCGC GATTGCGCTA 
GGGCATCCGC TAGGCTGCTC TGGTTCACGT ATCTCTACGA CCTTGATCAA CCTAATGGAA 
GCGAACGATA AATCCATCGG CTTAGCGACC ATGTGTATTG GTTTAGGCCA GGGTATTGCC 
ACTGTGTTCG AGCGCGTATA A 

 

Protein sequence

MKEVVVVDCI RTPMGRSKGG IFRNVRAETL SAHLMSKLIE RNPNLDPNEI EDIIWGCVQQ 
TKEQGFNIAR NAQLLTDIPR SVAAVTVNRL CGSSMQALHD ATSGIMSGRG DVYMIGGVEH 
MGHVPMDFNI DFHPGIAKTA ARASGSMGMT AELLGRQNGI SREMQDAFGA RSHQKAHAAA 
VEGRWNEIVA TEGHDADGIL KLIDADETIR PDSTTESMSG LRPVFDPVNG TVTAGTSSAL 
SDGASAMLIM SADKAKALGL TPRAKIRAMA VAGCDAAIMG FGPVPATQKA LKRAGMTMAD 
IELAEFNEAF AAQALSCIKQ LGWLDTYEDK VNLNGGAIAL GHPLGCSGSR ISTTLINLME 
ANDKSIGLAT MCIGLGQGIA TVFERV