Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0149 |
Symbol | |
ID | 4172636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 177901 |
End bp | 180309 |
Gene Length | 2409 bp |
Protein Length | 802 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053148 |
Product | TonB-dependent receptor |
Protein accession | YP_659735 |
Protein GI | 109896480 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0289902 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAAAC GAAACACACA AAAATTTCGC CTATGCGCAA TAAGTGCTGC GGTGATGGGA CTGATCAGTA CAGGGGCGAT GGCACAGCAA ACAAGCGCTG CTCAAAACAA AGCTCAAGAA GAAGATGTAG AGCAAATCAT TGTCACGGCG ACAAAGCGCG CAGAGTCAAT CGGCGATATT CCATTTTCAA TCAATGCGCA AACCCAGAAG GACTTTGAAC GAAGTGGTGC TAGTAATTTA GAAGATATTG CTCGCAACGT CGCGAGTGTG GCAATTCAAA ATCTTGGCCC CGGACAAAGC CAAGTATCCA TGCGCGGTGT ATCTGCAGGG CAAATCGTAC GTGACCAGCC GGGCGTGAAA GAGCAGGTGG GCGTTTATTT GGATGAAAGT GTTATTTCTC TATCGTTATT TACCCCTGAC TTAGACTTAT TTGATTTAAA TCGTATAGAG ACGCTGCGCG GCCCGCAAGG TACGCTATTT GGCTCAGGCT CAATAGGTGG AACGTTACGC TATATTACTA ATCAACCTGA ACTAGACACG TTCGAGGGTA AATTTGAAGC GAACCTGAAT TCAGTATCAG ACGGTGGCAC CGGCGGCAAT GTGAAAGGTA TGGTAAACCT GCCTATCTCA GATTCTGTCG CTATGCGCGC GGTGGTTTAT CGCACTGAAT ATGCGGGTTT TATTGACGCA TACGGTCCTG ATGATGCGTT TAAAGAAGAT GTTAACGACG GAGACAGAAC CGGTGGTCGA GTGGCGTTTG TTATCAGCCC AAATGACAAA CTCACTATTA CCCCGCGGAT CATATTTCAA GAGCTCGAAA TAAATGGCTT TAATAGACAA GACGCGTTCA ATATTTTCGC CAACCCTTAC ACCACAACGT GGCCAGCGAA ACAATTAAAA GATAGAGAGC AGTTCTTACT ATTAGAAGAA GGCTTTTCTG ACGATACGCT GATAGCTGAT TTGACCGCAG AGTATCAAGC TGAGATTGCT GACTTTACCT TTGTCTACAG CTACACAGAC CGAGATATTC TGGTGAGCCG AGATGCGAGC GCACTGTCTG GCTCAGTGAG TGTTGATTTA GGTTTCCCTG ATGCGGCCGT CACGCTGCCA TCGAACCTAC TCGATCGTAC AGAAGTGGAG CAAGACACGT TCGAGCTGCG CGCAGCATCA AACGATGACG GCGCGTTAGA TTGGATAGTC GGCGCGTTTT ATTCTTCAAC TGACCGAACG TACAAACAAA CACTACCCAC ACCTGGATAC GATAGCTTTA CCGATGCGAC CTTAGGTGCA GGTACTTCAG CGGCGGTAGC CAATGGGTTT GATGTCGATT CTCCTTACAA CGCTTTCTTG CCTTACGATC TGACACAGTT AGCTATTTTC GGTGAAGTTA ATTATCAAGT GAACGACGAT CTTAAAGTGA CTGCAGGTTC GCGTTTTTAT GATTACGAAG AAGAGCGTCA GTTTATTTCA GGCGGCTTGT TCGCCAATGG TGACAATCAA ACCGATGCAA CTGAATCTGA TGGCTTTACG TCACGTATTC TTGGTCAATA TCGCTTGAAC GATAACGTGA ACATTAACGC GCAGATTTCT GAAGGGTTTA GGTTAGGTGG GGTAAACGAT CCATTGAACA GAAGCTTGTG TTCTGATCAG GATGAGGCGA TTTTTGGTTC ATTCCAAGAT TATGAAGATG AGCAGTTAAC CAACTATGAG TTAGGCTTCA AATCTTCTGG CCGCGGCTGG AGCGCAAACG TGTCAGCGTT TTACAATGAT ATCGAAGACT TACAGGTGAC GTTAGATGCA GGCTCTTGTT CTTCTCGAGT GTCGTTTAAT GTGCCTGATG CCCACACGCA AGGCCTTGAA TTTGAGCTTA CACGCCAGTT CACAGATCAA TTATTCTTCT CTCTTAGCGG TAGCATTATA GAAGCAGAAT TTGACTCAAC CGTGGTTGAT GGCTCTGGTG CGGTACTCGG TGGGGTAGAA GATGGCAACC GGTTGGCGTC AGTGCCTGAA GAAAGTTTCT CGATTTCGTT TACTTACGAT CTCGCTTCGC CTTTGTTCTC TTCAAATAGC ACTTATTTCC AAGGCTCATA CCAGTACGTT GGTGATCGAA TCACTCAACC TAGCGACCAA GTCGCTGGTG CGGGCACGTT TGTTTCTGGT TTGGCCTTTG GTGGAGCAAC GGGTCAGGAA ACCACCGAAT TAGATTTGGT GCTTGATGCC TACGGCACCA TGAATCTTAG CTTTGGTTTA GCCTATGATG ATTACGAAAT TTTGTTGTAT GCCAATAATG TGTTTGATGA AAATGCGTTG TTGTCATTGG ACAGAGAGCG TGGAGGTCGG GCTCGACTCG GTTTTACGAC CAACCAACCT AGAACAATTG GTGCTACATT CCGTTACTTC TTTGAGTAA
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Protein sequence | MFKRNTQKFR LCAISAAVMG LISTGAMAQQ TSAAQNKAQE EDVEQIIVTA TKRAESIGDI PFSINAQTQK DFERSGASNL EDIARNVASV AIQNLGPGQS QVSMRGVSAG QIVRDQPGVK EQVGVYLDES VISLSLFTPD LDLFDLNRIE TLRGPQGTLF GSGSIGGTLR YITNQPELDT FEGKFEANLN SVSDGGTGGN VKGMVNLPIS DSVAMRAVVY RTEYAGFIDA YGPDDAFKED VNDGDRTGGR VAFVISPNDK LTITPRIIFQ ELEINGFNRQ DAFNIFANPY TTTWPAKQLK DREQFLLLEE GFSDDTLIAD LTAEYQAEIA DFTFVYSYTD RDILVSRDAS ALSGSVSVDL GFPDAAVTLP SNLLDRTEVE QDTFELRAAS NDDGALDWIV GAFYSSTDRT YKQTLPTPGY DSFTDATLGA GTSAAVANGF DVDSPYNAFL PYDLTQLAIF GEVNYQVNDD LKVTAGSRFY DYEEERQFIS GGLFANGDNQ TDATESDGFT SRILGQYRLN DNVNINAQIS EGFRLGGVND PLNRSLCSDQ DEAIFGSFQD YEDEQLTNYE LGFKSSGRGW SANVSAFYND IEDLQVTLDA GSCSSRVSFN VPDAHTQGLE FELTRQFTDQ LFFSLSGSII EAEFDSTVVD GSGAVLGGVE DGNRLASVPE ESFSISFTYD LASPLFSSNS TYFQGSYQYV GDRITQPSDQ VAGAGTFVSG LAFGGATGQE TTELDLVLDA YGTMNLSFGL AYDDYEILLY ANNVFDENAL LSLDRERGGR ARLGFTTNQP RTIGATFRYF FE
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