Gene Patl_0149 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0149 
Symbol 
ID4172636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp177901 
End bp180309 
Gene Length2409 bp 
Protein Length802 aa 
Translation table11 
GC content46% 
IMG OID638053148 
ProductTonB-dependent receptor 
Protein accessionYP_659735 
Protein GI109896480 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0289902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTAAAC GAAACACACA AAAATTTCGC CTATGCGCAA TAAGTGCTGC GGTGATGGGA 
CTGATCAGTA CAGGGGCGAT GGCACAGCAA ACAAGCGCTG CTCAAAACAA AGCTCAAGAA
GAAGATGTAG AGCAAATCAT TGTCACGGCG ACAAAGCGCG CAGAGTCAAT CGGCGATATT
CCATTTTCAA TCAATGCGCA AACCCAGAAG GACTTTGAAC GAAGTGGTGC TAGTAATTTA
GAAGATATTG CTCGCAACGT CGCGAGTGTG GCAATTCAAA ATCTTGGCCC CGGACAAAGC
CAAGTATCCA TGCGCGGTGT ATCTGCAGGG CAAATCGTAC GTGACCAGCC GGGCGTGAAA
GAGCAGGTGG GCGTTTATTT GGATGAAAGT GTTATTTCTC TATCGTTATT TACCCCTGAC
TTAGACTTAT TTGATTTAAA TCGTATAGAG ACGCTGCGCG GCCCGCAAGG TACGCTATTT
GGCTCAGGCT CAATAGGTGG AACGTTACGC TATATTACTA ATCAACCTGA ACTAGACACG
TTCGAGGGTA AATTTGAAGC GAACCTGAAT TCAGTATCAG ACGGTGGCAC CGGCGGCAAT
GTGAAAGGTA TGGTAAACCT GCCTATCTCA GATTCTGTCG CTATGCGCGC GGTGGTTTAT
CGCACTGAAT ATGCGGGTTT TATTGACGCA TACGGTCCTG ATGATGCGTT TAAAGAAGAT
GTTAACGACG GAGACAGAAC CGGTGGTCGA GTGGCGTTTG TTATCAGCCC AAATGACAAA
CTCACTATTA CCCCGCGGAT CATATTTCAA GAGCTCGAAA TAAATGGCTT TAATAGACAA
GACGCGTTCA ATATTTTCGC CAACCCTTAC ACCACAACGT GGCCAGCGAA ACAATTAAAA
GATAGAGAGC AGTTCTTACT ATTAGAAGAA GGCTTTTCTG ACGATACGCT GATAGCTGAT
TTGACCGCAG AGTATCAAGC TGAGATTGCT GACTTTACCT TTGTCTACAG CTACACAGAC
CGAGATATTC TGGTGAGCCG AGATGCGAGC GCACTGTCTG GCTCAGTGAG TGTTGATTTA
GGTTTCCCTG ATGCGGCCGT CACGCTGCCA TCGAACCTAC TCGATCGTAC AGAAGTGGAG
CAAGACACGT TCGAGCTGCG CGCAGCATCA AACGATGACG GCGCGTTAGA TTGGATAGTC
GGCGCGTTTT ATTCTTCAAC TGACCGAACG TACAAACAAA CACTACCCAC ACCTGGATAC
GATAGCTTTA CCGATGCGAC CTTAGGTGCA GGTACTTCAG CGGCGGTAGC CAATGGGTTT
GATGTCGATT CTCCTTACAA CGCTTTCTTG CCTTACGATC TGACACAGTT AGCTATTTTC
GGTGAAGTTA ATTATCAAGT GAACGACGAT CTTAAAGTGA CTGCAGGTTC GCGTTTTTAT
GATTACGAAG AAGAGCGTCA GTTTATTTCA GGCGGCTTGT TCGCCAATGG TGACAATCAA
ACCGATGCAA CTGAATCTGA TGGCTTTACG TCACGTATTC TTGGTCAATA TCGCTTGAAC
GATAACGTGA ACATTAACGC GCAGATTTCT GAAGGGTTTA GGTTAGGTGG GGTAAACGAT
CCATTGAACA GAAGCTTGTG TTCTGATCAG GATGAGGCGA TTTTTGGTTC ATTCCAAGAT
TATGAAGATG AGCAGTTAAC CAACTATGAG TTAGGCTTCA AATCTTCTGG CCGCGGCTGG
AGCGCAAACG TGTCAGCGTT TTACAATGAT ATCGAAGACT TACAGGTGAC GTTAGATGCA
GGCTCTTGTT CTTCTCGAGT GTCGTTTAAT GTGCCTGATG CCCACACGCA AGGCCTTGAA
TTTGAGCTTA CACGCCAGTT CACAGATCAA TTATTCTTCT CTCTTAGCGG TAGCATTATA
GAAGCAGAAT TTGACTCAAC CGTGGTTGAT GGCTCTGGTG CGGTACTCGG TGGGGTAGAA
GATGGCAACC GGTTGGCGTC AGTGCCTGAA GAAAGTTTCT CGATTTCGTT TACTTACGAT
CTCGCTTCGC CTTTGTTCTC TTCAAATAGC ACTTATTTCC AAGGCTCATA CCAGTACGTT
GGTGATCGAA TCACTCAACC TAGCGACCAA GTCGCTGGTG CGGGCACGTT TGTTTCTGGT
TTGGCCTTTG GTGGAGCAAC GGGTCAGGAA ACCACCGAAT TAGATTTGGT GCTTGATGCC
TACGGCACCA TGAATCTTAG CTTTGGTTTA GCCTATGATG ATTACGAAAT TTTGTTGTAT
GCCAATAATG TGTTTGATGA AAATGCGTTG TTGTCATTGG ACAGAGAGCG TGGAGGTCGG
GCTCGACTCG GTTTTACGAC CAACCAACCT AGAACAATTG GTGCTACATT CCGTTACTTC
TTTGAGTAA
 
Protein sequence
MFKRNTQKFR LCAISAAVMG LISTGAMAQQ TSAAQNKAQE EDVEQIIVTA TKRAESIGDI 
PFSINAQTQK DFERSGASNL EDIARNVASV AIQNLGPGQS QVSMRGVSAG QIVRDQPGVK
EQVGVYLDES VISLSLFTPD LDLFDLNRIE TLRGPQGTLF GSGSIGGTLR YITNQPELDT
FEGKFEANLN SVSDGGTGGN VKGMVNLPIS DSVAMRAVVY RTEYAGFIDA YGPDDAFKED
VNDGDRTGGR VAFVISPNDK LTITPRIIFQ ELEINGFNRQ DAFNIFANPY TTTWPAKQLK
DREQFLLLEE GFSDDTLIAD LTAEYQAEIA DFTFVYSYTD RDILVSRDAS ALSGSVSVDL
GFPDAAVTLP SNLLDRTEVE QDTFELRAAS NDDGALDWIV GAFYSSTDRT YKQTLPTPGY
DSFTDATLGA GTSAAVANGF DVDSPYNAFL PYDLTQLAIF GEVNYQVNDD LKVTAGSRFY
DYEEERQFIS GGLFANGDNQ TDATESDGFT SRILGQYRLN DNVNINAQIS EGFRLGGVND
PLNRSLCSDQ DEAIFGSFQD YEDEQLTNYE LGFKSSGRGW SANVSAFYND IEDLQVTLDA
GSCSSRVSFN VPDAHTQGLE FELTRQFTDQ LFFSLSGSII EAEFDSTVVD GSGAVLGGVE
DGNRLASVPE ESFSISFTYD LASPLFSSNS TYFQGSYQYV GDRITQPSDQ VAGAGTFVSG
LAFGGATGQE TTELDLVLDA YGTMNLSFGL AYDDYEILLY ANNVFDENAL LSLDRERGGR
ARLGFTTNQP RTIGATFRYF FE