Gene Patl_0148 details

Gene Information

• Locus tag: Patl_0148
• ID: 4172635
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 176706
• End bp: 177308
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638053147
• Product: single-strand binding protein
• Protein accession: YP_659734
• Protein GI: 109896479
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0629] Single-stranded DNA-binding protein
• TIGRFAM ID: [TIGR00621] single stranded DNA-binding protein (ssb)

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000650066
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAGCA AAGGCGTAAA TAAAGTCATC TTGGTGGGCA ACTTAGGGCA AGATCCTGAA 
GTACGTTATA TGCCAAATGG TAATGCGGTA GCGAACTTAA GCATCGCGAC CAGTGAAAGC 
TGGAAAGACC AACAAGGGCA AATGCAAGAG CGCACCGAAT GGCATCGCCT GACTATGTAT 
CGCCGTTTAG CTGAAGTGGC TGGCGAATAC TTGCGTAAAG GCTCACAAAT TTACGTAGAA 
GGTAAATTGC AAACCCGTAA ATGGCAAGAT CAGCAAGGCC AAGACAAATA CACTACAGAA 
GTGATTGTCG ACCAAATGCA AATGTTAGGT GGTAAAGGCG GCGGTCAATC TGAAGGCGGT 
TTCCAAGGGC AGCAGCGTCA ACCTGCACAG CGTCCTGCAC AAGGCGGTCA AAATGCTGGC 
GGCCAGCGCT CTGGCGGTCA AAATTCAGGT GGTTTTCAAC AATCTCCTAA CCAAGGTTAC 
AACCAAGCAC CTCAAGGTGG CCAAGGCAAT CAAGGTTTCA ACCAAGCCCC GCAAGGCGGC 
CAAAACAAGC CAGCACCTAT GGCTGAACCC GACTTTGATT TCGACGATGA TATTCCGTTT 
TAA 

 

Protein sequence

MASKGVNKVI LVGNLGQDPE VRYMPNGNAV ANLSIATSES WKDQQGQMQE RTEWHRLTMY 
RRLAEVAGEY LRKGSQIYVE GKLQTRKWQD QQGQDKYTTE VIVDQMQMLG GKGGGQSEGG 
FQGQQRQPAQ RPAQGGQNAG GQRSGGQNSG GFQQSPNQGY NQAPQGGQGN QGFNQAPQGG 
QNKPAPMAEP DFDFDDDIPF