| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0147 |
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| Symbol | |
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| ID | 4172634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 175046 |
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| End bp | 176389 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638053146 |
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| Product | major facilitator transporter |
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| Protein accession | YP_659733 |
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| Protein GI | 109896478 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00532469 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATAGAA CCGAAATTCG CGCCTCTTTG GCTTTGGCCG CTGTTTATGT CTTGCGTATG
CTGGGATTGT TTATGGTGAT GCCAGTACTG GCCATACTCG CGGTACATTA CCCAGATTAT
TCAGCCCTAA TGCTTGGTTT AGCTATTGGT GGCTATGGTT TGACCCAAGC TATTTTGCAA
ATCCCCATGG GGGTGTTGTC CGATAAGATT GGCCGCAAAC CTGTCATCGT TGGCGGGTTA
CTGATGTTTG CTATTGGTAG CGGTGTTGCC GCGACCGCAG ATAGCATGTT ATGGATTGTG
ATCGGCCGAT TTTTGCAAGG TGCTGGGGCA ATTGCCGGTG CCATCATGGC ATTAGCTGGG
GACGTGAGTC GCGAGCAGCA GCGGCCAAAA GTGATGGCGA TTATCGGCAT TGCTATTGGT
TTTTCATTTT ATATAGCCTT GCTAATAGGC CCTGTCATTG CGGATAATTA CGGTCTGCAC
GGTATATTTT CTATTACAGG TATACTCGCT ATTTCATGCA TACCTTTGGT CATTTGGGTG
GTGCCCAGCG CAATAAACTA CGCGCCCAAG GGCGATACCC TACCTGTTCT TACCGATGTG
AAAATCTTGT TCTTCGACCC ACAGTTACGC CGTTTGAACA TCAGCGTGAT GTTACTGCAT
ATGATGATCA CGGTTTTGTT TGTACAAATG CCCATTTTAC TCAGTGCTTT AGGCTGGCAG
CTAGAAAGTC ACTGGCAACT ATATTTACCC ATACTCGCAG CTTCTGTCGT TGGCTTAGTC
GCGTTGATGA TGTTAACCAA AAGGATGAGC CAAGCGGGCG TGATTCGTTT GTGCATATTA
TTACTAGGTG GCGCATTACT CGGTTTGCAC TTTTCCCACA GTACCGTGCT TGCGGTAATG
GTATTTGGCT GGCTATTTTT TACCGGCTTT AATTTCTTAG AAGCAAGTTT TCCGGCTATG
GTGTCAAGTA TTGCCCCAGC GGGTAAAAAA GGCTCTGCCA TGGGGATTTA CGCCAGCTTT
CAGTTTTTAG GGGCATTTTT AGGCGGTACA TTATCAGGCT TAGCCAGTCA GTATATTGGC
CCCCAGTGGG TGTTCGTTAT TGCTGGCGGT GCCTGTGGTA TATGGTGGCT TGGTTTACGT
AAGTTAGGTA CCAGTGAACG CTTGAAACGC TTTACACTAA AACCAGATTT TACCCGTTAT
TCAGCCGATA CCATTGGTGA GCAGTTAGCC ACACTCGAAG GAGTGGTAGA TGTGACGGTA
GTGCCAGATG AGGGTGTGGT CTATATCAAG GCAGATGGTA AGCAATTCTC ACTGGAAAAG
GCTCATATTT TAGTCAACGG CTAA
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| Protein sequence | MNRTEIRASL ALAAVYVLRM LGLFMVMPVL AILAVHYPDY SALMLGLAIG GYGLTQAILQ
IPMGVLSDKI GRKPVIVGGL LMFAIGSGVA ATADSMLWIV IGRFLQGAGA IAGAIMALAG
DVSREQQRPK VMAIIGIAIG FSFYIALLIG PVIADNYGLH GIFSITGILA ISCIPLVIWV
VPSAINYAPK GDTLPVLTDV KILFFDPQLR RLNISVMLLH MMITVLFVQM PILLSALGWQ
LESHWQLYLP ILAASVVGLV ALMMLTKRMS QAGVIRLCIL LLGGALLGLH FSHSTVLAVM
VFGWLFFTGF NFLEASFPAM VSSIAPAGKK GSAMGIYASF QFLGAFLGGT LSGLASQYIG
PQWVFVIAGG ACGIWWLGLR KLGTSERLKR FTLKPDFTRY SADTIGEQLA TLEGVVDVTV
VPDEGVVYIK ADGKQFSLEK AHILVNG
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