Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0115 |
Symbol | |
ID | 4171797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 129932 |
End bp | 131038 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638053114 |
Product | hypothetical protein |
Protein accession | YP_659701 |
Protein GI | 109896446 |
COG category | [S] Function unknown |
COG ID | [COG2855] Predicted membrane protein |
TIGRFAM ID | [TIGR00698] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCGGGG CAGTTAAGCG TTTTTTCATT ACGGGGCAAG ATGGTACCTC AAGCACACGC CATCATTATG GCGATTCACG CTGGTGGTTA GGTTTAGTCT TAGTAACAAG CATCGCGTTT ATCGCCACTT ATCTGAGTCA TGTTTCCTTT GTCCAACATC TTGGATTGAG CGCACTAACC ATAGGTATTG TGTTGGGGAT TATTGTTGGC AACACGCTAT TTTCGCGTAT GGCCACGCAC ACTGATGTAG GCGTAGATTA CGCCAAGAGT ACCTTATTAA AAGCCGGTGT GGTGTTATTT GGTTTTCGCA TTACCTTCGC ACAAGTGGCG GGAGTCGGCT GGCAAGGGTT AATTACTGAC ATCGCCATAT TGAGCTTAAC TTTTTGGCTG GCAGTGCAAC TTGGTAAGCG TGTATTTAAG TTAGACGAGC AAACCACCAT TTTGATTGGT GCCGGTAGCG CTATTTGTGG TGCAGCGGCG GTGATGGCTA CAGAGCCTGT GGTAAAAGCT CAAGCGCACA AGGTTTCCGT CGCAGTCGCT ACCGTGGTGG TGTTTGGCAC CTTGAGCATG TTTGTTTATC CCATTGCCCA AGGTTACTTA GGCCTCAGTG AGCATGCATA CGGTATTTTC GCTGGTTCAA CGATTCACGA AGTGGCGCAA GTCGTGGCGG CAGGCAGTGC TGTTAGCCCT GAAGCCGCTA ACGCGGCGGT GATTGAGAAA ATGCTCAGGG TGATGATGCT TGCCCCGTTT TTAGTGCTGT TATCGCTGTG GCAAAGCAAC AAGCGCGCTA CGGGCAAAGT GGTCGACGGA GCTAGCTCAC AGGGCGACAG TGGTAAAAGC AACATCATGA TCCCCTGGTT TGCCCTACTA TTTATTGTTG CCAGTGGGAT TAATTCTAGC CAGTTGGTTT CACCTGATAT TACCGAGCAA GTTGTGCATT TAGACGGCGT GTTACTTACC ATTGCCATGG TGGCGTTAGG GCTGCGAACG CACATAGGCG CAATCCGCCA AGCTGGCGTA AAACCCTTGC TACTAGCAAG CTGTTTGTTT TTGTTCTTAA CCCTAGGCGG ATATGGGCTG AATTTAGTGA TAGCTCAGTG GTTATAA
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Protein sequence | MFGAVKRFFI TGQDGTSSTR HHYGDSRWWL GLVLVTSIAF IATYLSHVSF VQHLGLSALT IGIVLGIIVG NTLFSRMATH TDVGVDYAKS TLLKAGVVLF GFRITFAQVA GVGWQGLITD IAILSLTFWL AVQLGKRVFK LDEQTTILIG AGSAICGAAA VMATEPVVKA QAHKVSVAVA TVVVFGTLSM FVYPIAQGYL GLSEHAYGIF AGSTIHEVAQ VVAAGSAVSP EAANAAVIEK MLRVMMLAPF LVLLSLWQSN KRATGKVVDG ASSQGDSGKS NIMIPWFALL FIVASGINSS QLVSPDITEQ VVHLDGVLLT IAMVALGLRT HIGAIRQAGV KPLLLASCLF LFLTLGGYGL NLVIAQWL
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