| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0108 |
|---|
| Symbol | |
|---|
| ID | 4171790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 123970 |
|---|
| End bp | 124719 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638053107 |
|---|
| Product | peptidylprolyl isomerase |
|---|
| Protein accession | YP_659694 |
|---|
| Protein GI | 109896439 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000088366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CCGCTATCGC GATTCTAATT ACCTCAGCCA TTGGCCTTAC CGCCTGTGGT
CAACAAGACA CGGATTTACT AAAAGTTGAA GAGCAAAAGC TTGAAACAGA AGCACAGCAG
CAAGCTTATG CAATGGGCGC GAGCGTGGGA CAGTTCATCG AGCAAAAAAT GAATGAACAA
GAAGCACTAG ACGTTAACCT CGATAAAGAC TTAGTGGTTA AAGGATTTGT AGCGGCGCTA
CAGGGTCAGT CTCAGCTTGA TATGAAAGAG ATTCAAACGC TTACATTAGC TATGGAAGCG
GCTTCACGTG AAAAGCAAAA AGCTATTTCT GATGCAAAAG CAGAAACAAA CATTGCTGAT
GGCGAGAAAT TCCTTACTGA AAACGCAGAG CGTGAAGGCG TAACAGTGAC CGATTCAGGT
TTACAGTACG AAGTCATGAG CGAAGGCGAA GGTGCATCTC CTACTGCTGA AGACACTGTA
ACCGTACATT ACAAAGGCAC ATTGCTAGAT GGCACTGAGT TTGACTCATC TTATAGCCGC
GGCGAGCCAG CAACCTTCCC TCTTTCGCGC GTCATTCCTG GTTGGACCGA AGGTGTGCAG
TTGATGAAAG TGGGCTCTAA GTTCAAATTC TTCATTCCAT CTGAGCTGGC TTACGGCGAG
CGCGCGACTG GAAAAATTAC GCCTAATTCC ACGCTAGTAT TTGAAGTAGA GCTATTAGAT
GTTGCTTCTG CTGAAGGTGC TGCTGAATAA
|
|---|
| Protein sequence | MKKTAIAILI TSAIGLTACG QQDTDLLKVE EQKLETEAQQ QAYAMGASVG QFIEQKMNEQ
EALDVNLDKD LVVKGFVAAL QGQSQLDMKE IQTLTLAMEA ASREKQKAIS DAKAETNIAD
GEKFLTENAE REGVTVTDSG LQYEVMSEGE GASPTAEDTV TVHYKGTLLD GTEFDSSYSR
GEPATFPLSR VIPGWTEGVQ LMKVGSKFKF FIPSELAYGE RATGKITPNS TLVFEVELLD
VASAEGAAE
|
|---|
| |