| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0092 |
|---|
| Symbol | prmA |
|---|
| ID | 4172864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 106492 |
|---|
| End bp | 107370 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638053091 |
|---|
| Product | ribosomal protein L11 methyltransferase |
|---|
| Protein accession | YP_659678 |
|---|
| Protein GI | 109896423 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2264] Ribosomal protein L11 methylase |
|---|
| TIGRFAM ID | [TIGR00406] ribosomal protein L11 methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTGGA TCCAACTCAT CATCGACACC AAAGCCAAAT ATGCCGAACA AGTAGGCGAT
ATGTTAAGTG CCAATGGTGC ACAAGCAGTC ACCTTTGTTG ACGCCAAAGA CACCCCTATG
TACGAGCCCA AGCCAGGAGA GGTGATGTTA TGGCCTGAAA CGCAAGTCAT GGGCTTATAC
GAAGCGGATT ATGATATGGA CGGCGTCGTG GCAAGAATGA GTAAATCAAA GGTGCTAGGG
GCAGATTTCC CTCACAAGCT TGACCAACTA GAAGACAAAG ATTGGGAGCG AGAATGGATG
GACAACTTTC ACCCTATGCG TTTTGGTCAG CGCCTGTGGA TTTGCCCAAG TTGGCGCGAC
GTGCCTGACC CAAGCGCGGT GAATGTTATG CTCGACCCAG GACTCGCATT CGGCACGGGT
ACGCACCCAA CAACCGCCTT GTGTTTACGT TGGTTAGATG CGCTAGAGTT AAGCGATAAG
TTAGTGGTCG ATTTTGGCTG TGGCTCCGGA ATACTGGGGA TAGCGGCAAT TAAGTTAGGC
GCGAAGCGGG TGGTAGGCAT CGATATTGAC CCTCAAGCCC TACTGTCGAG CCAAACCAAT
GCCGATCGTA ATCACATAGG CGACAAAATA GAGCTGTATT TGCCCGAGCA TCAACCTGAA
TTAAAGGCTG ATGTCGTGCT GGCGAATATA CTCGCAGGAC CACTTCGGGA TTTACGTGAA
GTGATCACTG CGTATTGTAA ATCTGGTGGC AAATTGGTTC TATCTGGCAT CTTGGCCGAA
CAGGCTCAAG GGATCAACGA TTTATACAGT CAAGACTTTC ACATGGAGCC GATTGAAATT
GACGGTGAAT GGGCCAGGGT ATCAGGTAAG CGCAAATAG
|
|---|
| Protein sequence | MPWIQLIIDT KAKYAEQVGD MLSANGAQAV TFVDAKDTPM YEPKPGEVML WPETQVMGLY
EADYDMDGVV ARMSKSKVLG ADFPHKLDQL EDKDWEREWM DNFHPMRFGQ RLWICPSWRD
VPDPSAVNVM LDPGLAFGTG THPTTALCLR WLDALELSDK LVVDFGCGSG ILGIAAIKLG
AKRVVGIDID PQALLSSQTN ADRNHIGDKI ELYLPEHQPE LKADVVLANI LAGPLRDLRE
VITAYCKSGG KLVLSGILAE QAQGINDLYS QDFHMEPIEI DGEWARVSGK RK
|
|---|
| |