| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0081 |
|---|
| Symbol | |
|---|
| ID | 4171782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 94987 |
|---|
| End bp | 96576 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638053080 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_659667 |
|---|
| Protein GI | 109896412 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.63025 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATTA CCTCGTTAGC ATTGCTTTTG GCAACCTGCA TCAATTTATA CGGTCAAATC
AGCAGCTACC GTCTTCAACT CATCAACAAC GTCAACATCT TTTCCGAGCT CATCAGCCGT
AATGCGGTTG CCACAATCGA AGATGAGCTC AATTTCAATG AAGAGCGTAA TCTCAGCACA
CTCAGTGCAT CGGATATATT AGAAAATGTG CATATTTATC GCTTTGTGGA AGACGGTAAA
TTAGAATTTT TCGCCAGCTA CAACAAAGAC GGTGTCGCCC CTGTAAATGC CAAATTTGAT
CGTATTGAAG CACTATCTCA AGCGGCTATT GATGGCAGTA CCGTTGAGGT GATACGTGAA
ATTAATCGCG ATGATGGTCA GTTATTAGGT TATACCTATG TGCGCGCTTC AGCTGATGGC
CTTGAGAGAT TAATTTCTCG CTCAGTAGGT ATAGCGGTGG GCGTGCTGCT TTTGTCTTTA
CTACTGTGCT TCTTGCTCAC CTTAAAGTTG CAGAACACGA TCACCGCGCC GATCCGCAAT
TTAGCACACT TGGTGCAACG CATTTCTCGT CACAAAGATT ATTCAGGCCG AGCTCAGCCG
AGCAACATCA AAGAACTGGA TATTCTCAGC GATGCATTTA ATGCCATGAT GCAGCGCACT
CAAGAGCATC TGCAGCGGCA AAATGAGGCT GAAGAAGAGC ACAGACGACT CAACAGTAGC
CTCGAGGAAA AGGTCACTCA GCGTACGCTT GCTTTAAAAG AAGCAAACAA CGAACTCATT
CAAACCTTAG AGAAACTGCA TCAATTTCAG CGTCAAATGG TGCAGAACGA GAAAATGGCT
TCCCTTGGAG ATATGGTGGC GGGGGTTGCT CACGAGGTAA ACACACCTAT TGGTCTTGGT
GTGACTGCGT CAACGATGAT GCTCGACCGC TTAGCGGGCA TGCAGAAAGA CTTTGAGAAT
AAAACGCTAA AAGCCAGTTC GTTATCCAAG TTTATCTCAG AAGGCCAAGA AAACCTCAAT
ATCATCTATC GCAACTTAAA TCGAGCGGCG GAGCTGATAT CTAGCTTTAA GCAAGTTGCG
GTAGACCAAT CATCAGAGGT CGACAGGGTT TTCTCATTTT CAAAACTGAT GGATGAAATT
TTGTTATCCA TGCGCCCAAA ACTGAAAAGC ATGAAGCACG TCATTCATGT CGAATGTCCT
GAAAATTTAT ATATTGAGTC TAAAGCGGGC CCAATTAACC AGATTATGAT CAACTTGATT
ATGAATTCCA TTATTCACGG CTTCGAGAAC AAAGACCAAG GCGAAATTAA CATCAAAATC
AGTTTGATTG CCGAGAAAAA AATCAGCGTA GTATTTTCAG ATGATGGTGC GGGTATCCCC
GAGTATTTAC GTAAGCGTAT TTTTGATCCC TTTGTCACCA CCAAGCGTGG ACAGGGCGGG
AGTGGCTTAG GTATGCATCT GGTGTACAAC TTAGTCACTC AAGCGCTAAA TGGTTCAATA
GCTTTAACCA GCGAAGAAGG GCAGGGGGTC GAGTTCACCA TCTTGTTTCC GGTAAAAAAA
GCTACCCAAA CGTTGGCGCG CAAAAACTAA
|
|---|
| Protein sequence | MAITSLALLL ATCINLYGQI SSYRLQLINN VNIFSELISR NAVATIEDEL NFNEERNLST
LSASDILENV HIYRFVEDGK LEFFASYNKD GVAPVNAKFD RIEALSQAAI DGSTVEVIRE
INRDDGQLLG YTYVRASADG LERLISRSVG IAVGVLLLSL LLCFLLTLKL QNTITAPIRN
LAHLVQRISR HKDYSGRAQP SNIKELDILS DAFNAMMQRT QEHLQRQNEA EEEHRRLNSS
LEEKVTQRTL ALKEANNELI QTLEKLHQFQ RQMVQNEKMA SLGDMVAGVA HEVNTPIGLG
VTASTMMLDR LAGMQKDFEN KTLKASSLSK FISEGQENLN IIYRNLNRAA ELISSFKQVA
VDQSSEVDRV FSFSKLMDEI LLSMRPKLKS MKHVIHVECP ENLYIESKAG PINQIMINLI
MNSIIHGFEN KDQGEINIKI SLIAEKKISV VFSDDGAGIP EYLRKRIFDP FVTTKRGQGG
SGLGMHLVYN LVTQALNGSI ALTSEEGQGV EFTILFPVKK ATQTLARKN
|
|---|
| |