| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0064 |
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| Symbol | |
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| ID | 4171898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 75364 |
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| End bp | 76242 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053062 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_659650 |
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| Protein GI | 109896395 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCGC CTTTTTTACT GGTTAGCTTT AATCAAGAAC GTGCCGCTCG ATTACTCATA
AACTATTTGA ATAGTCAGGG AATAGCCGCT CAATATTACG TCGATAAAAA TGACGTAAAT
AGTGCTGAAC ATGGTGTACA ACTGCTCAGC GAAGCCGACA AAGACGTTGC TAGCCATATT
GCCAGCGAAT TTGTTCAGTC CCCCCAAGAC GAAAAATACC AGCAAGCCGC TTGGGATAGC
GGCGAGACGG TTAGGCTGCG TGATAAAAAT TCGGGAATTT CTGCTAGCGG TATTTGGCAA
CAACTGCGTG ATATTCCCTT TACAACCAGT GTGTTACTCA CCTGTATGAT TGTGTATCTG
CTGGCGATGG TAGGCTTTTT TTGGCCGTAC AAGGTATTGG CGATCGAGCC ACTTCCTCAG
CTAATGGAAA ATCATCAATG GTGGCGGTTA ATCGGGCCCG CACTCATTCA TTTCTCGGTA
CTGCATATTG TATTCAATTT GTTGTGGTGG TGGACACTCG GCGGACAAAT AGAAAGGCTT
TTAGGGAAAA CTACGCTTAT CATCTTATTC TTATCCTCAG CGTTACTATC CAATGTTGGC
CAGCTATTGG TTAGTGGCGA GCATTTTGGT GGCCTGTCAG GTGTGGTTTA TGCTTTGGTT
GGTTGCGTGT GGTGGTTAGG GTGGCTGCGC CCATCTTGGG GGCTTATGAT GCCTAAGCCT
ATGGTCGGTT TCTTGTTAGT ATGGTTGGTG GTGGGTTATG CAGATGTATT GTGGGTTAGC
ATGGCAAATA CTGCGCATAC TGTCGGCTTA ATCAGTGGCT GTGCCTTTGC TTTTATACTC
AGCCGATCTG CAGTAAATAA ACGAAGTATT AACAGCTAA
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| Protein sequence | MSAPFLLVSF NQERAARLLI NYLNSQGIAA QYYVDKNDVN SAEHGVQLLS EADKDVASHI
ASEFVQSPQD EKYQQAAWDS GETVRLRDKN SGISASGIWQ QLRDIPFTTS VLLTCMIVYL
LAMVGFFWPY KVLAIEPLPQ LMENHQWWRL IGPALIHFSV LHIVFNLLWW WTLGGQIERL
LGKTTLIILF LSSALLSNVG QLLVSGEHFG GLSGVVYALV GCVWWLGWLR PSWGLMMPKP
MVGFLLVWLV VGYADVLWVS MANTAHTVGL ISGCAFAFIL SRSAVNKRSI NS
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