Gene Patl_0040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_0040 
Symbol 
ID4172885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp49808 
End bp51577 
Gene Length1770 bp 
Protein Length589 aa 
Translation table11 
GC content46% 
IMG OID638053038 
Producthypothetical protein 
Protein accessionYP_659626 
Protein GI109896371 
COG category[S] Function unknown 
COG ID[COG4805] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACAAGC GCAGTTTGAT GCTAGCGGCA GTAATGTTGA GTTTTTGCTT TCAAGCCTTC 
GGAGCAAGCG AGCCTTCACA GTCACGTAAA TTAAGTGCTT TGCTAGAGCA AATTTGGCAG
TACCAGTTGT CAGTTGACCC AATAAAGGCC ACCCGTTATC GAAACAACCG CTACAACGAC
AAACTGAAAG ATCTCTCCCC CGAGGCTTTA CAGACCCATG AACAGCGAAA CCAGCAGTTT
TTAGCTCGCT TAAAGGGCGT GGACGATAGC GGCTTAAACC ATCAGCAAAA GATCAACAAA
TTGATGCAGA TGCGCGAGCT GCAAAACGAC ATTGACTTAT ATCGCTTCAA CGCCCATTAC
ATGCCGATTA CGTCAGAGTC GGGTTTTTAC AGCTCGTTGG CATTTTTACC AGCCTCAGCC
CCGTTTAAAA CTCAGCAAGA TTATCAAAAC TACCTAGCTC GCTTAAACCA ATTTCCTCGC
TATTTCGCCC AACAAATTGC TTGGATGAAA AAAGGTATTG AAACTGGCCG CGTGCAGCCA
AAATCGGTGC TTGTTGGGTT TGACGACACT ATTAAAAAAT TCATTACCGA AGACCTACAC
GACAGTCAAT TTTTTGCCCC GTTTAAACGC CTTGCCGAAT CAAGTTTTAG TTCAGCCGTT
CAGGCTAGCT TATACACGCA AGGTGAAACC GCCATTAACC AGAGTGTGTG GCCTGCCTAT
CAGAGCTTTT ATGACTTCTT AGTGAATGAA TACATCCCTA ACGCAAAACA AGATATTGCC
GCCAACACAT GGCAAAACGG CGCCGCGTTT TATCAAAATC GTAGCGATTA CTACACCAGT
ACCAATCTAG ATGTAGCCGA TATTCATCAA ACCGGTTTGC AAGAGGTAAA ACGCATTCGC
AGTGAAATGC AGAGCGTATT AGACACCCTT AACTTTGAAG GTGATATTAA TCAGTTTATT
CGGTACTTAC GCACCTCCCC CGAGTTTTAT GCCACCAGTG CAGACGAGCT TTTAATGCGT
GCTTCATATA TAGCCAAACG CATTGATGCC ACGCTCCCTC AGTTATTTTA CACTTTGCCC
CGCGTGCCTT ACGGTGTGGC GCCGGTGCCT GATAATATCG CCCCTAAATA TACCACTGGG
CGTTATATCG CCCCAACAAG AGACGACCAG CCGGGTTACT ATTGGGTGAA CACTTATGCG
CTGGATAAGC GCCCTTTGTA TGCCCTGCCC GCGCTTACCT TGCACGAAGC AGTACCTGGT
CATCATTTGC AAATATCGCT GGCAAGTGAA ATGCAAGACT TACCTCCTGT TCGCCGTTAC
ACCTATATTT CAGCGTTTGG TGAGGGCTGG GGTTTATATT CTGAATTCTT GGGTAAAGAA
GTGGGGATTT ACACCACACC TTATGAAGAA TTTGGCCGTT TAAGCTATGA AATGTGGCGC
GCGTGTCGTT TAGTGGTCGA TACGGGTATG CATATGCAGG GTTGGTCGCG CCAACAAGCC
ATTGACTACA TGCTGGAAAA CACTGCTTTA TCTGAACATA ATGTCACCAC AGAAGTGGAC
CGCTACATAT CATGGCCAGC CCAGGCTTTA TCCTACAAAA TTGGTGAATT AACCATTAAA
CGCCTACGTA AAAAAGCCGA AGACGCATTG GGCGACAAGT TCGACTTACG CGCCTTTCAC
GATGCAGTGC TCGCCTACGG CTCAGTGCCC TTGTCGATTT TAGAACAGAA TATAGATATG
TTTATTGAAG TAAACTCCAA ACATAAGTGA
 
Protein sequence
MYKRSLMLAA VMLSFCFQAF GASEPSQSRK LSALLEQIWQ YQLSVDPIKA TRYRNNRYND 
KLKDLSPEAL QTHEQRNQQF LARLKGVDDS GLNHQQKINK LMQMRELQND IDLYRFNAHY
MPITSESGFY SSLAFLPASA PFKTQQDYQN YLARLNQFPR YFAQQIAWMK KGIETGRVQP
KSVLVGFDDT IKKFITEDLH DSQFFAPFKR LAESSFSSAV QASLYTQGET AINQSVWPAY
QSFYDFLVNE YIPNAKQDIA ANTWQNGAAF YQNRSDYYTS TNLDVADIHQ TGLQEVKRIR
SEMQSVLDTL NFEGDINQFI RYLRTSPEFY ATSADELLMR ASYIAKRIDA TLPQLFYTLP
RVPYGVAPVP DNIAPKYTTG RYIAPTRDDQ PGYYWVNTYA LDKRPLYALP ALTLHEAVPG
HHLQISLASE MQDLPPVRRY TYISAFGEGW GLYSEFLGKE VGIYTTPYEE FGRLSYEMWR
ACRLVVDTGM HMQGWSRQQA IDYMLENTAL SEHNVTTEVD RYISWPAQAL SYKIGELTIK
RLRKKAEDAL GDKFDLRAFH DAVLAYGSVP LSILEQNIDM FIEVNSKHK