Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0040 |
Symbol | |
ID | 4172885 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 49808 |
End bp | 51577 |
Gene Length | 1770 bp |
Protein Length | 589 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053038 |
Product | hypothetical protein |
Protein accession | YP_659626 |
Protein GI | 109896371 |
COG category | [S] Function unknown |
COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACAAGC GCAGTTTGAT GCTAGCGGCA GTAATGTTGA GTTTTTGCTT TCAAGCCTTC GGAGCAAGCG AGCCTTCACA GTCACGTAAA TTAAGTGCTT TGCTAGAGCA AATTTGGCAG TACCAGTTGT CAGTTGACCC AATAAAGGCC ACCCGTTATC GAAACAACCG CTACAACGAC AAACTGAAAG ATCTCTCCCC CGAGGCTTTA CAGACCCATG AACAGCGAAA CCAGCAGTTT TTAGCTCGCT TAAAGGGCGT GGACGATAGC GGCTTAAACC ATCAGCAAAA GATCAACAAA TTGATGCAGA TGCGCGAGCT GCAAAACGAC ATTGACTTAT ATCGCTTCAA CGCCCATTAC ATGCCGATTA CGTCAGAGTC GGGTTTTTAC AGCTCGTTGG CATTTTTACC AGCCTCAGCC CCGTTTAAAA CTCAGCAAGA TTATCAAAAC TACCTAGCTC GCTTAAACCA ATTTCCTCGC TATTTCGCCC AACAAATTGC TTGGATGAAA AAAGGTATTG AAACTGGCCG CGTGCAGCCA AAATCGGTGC TTGTTGGGTT TGACGACACT ATTAAAAAAT TCATTACCGA AGACCTACAC GACAGTCAAT TTTTTGCCCC GTTTAAACGC CTTGCCGAAT CAAGTTTTAG TTCAGCCGTT CAGGCTAGCT TATACACGCA AGGTGAAACC GCCATTAACC AGAGTGTGTG GCCTGCCTAT CAGAGCTTTT ATGACTTCTT AGTGAATGAA TACATCCCTA ACGCAAAACA AGATATTGCC GCCAACACAT GGCAAAACGG CGCCGCGTTT TATCAAAATC GTAGCGATTA CTACACCAGT ACCAATCTAG ATGTAGCCGA TATTCATCAA ACCGGTTTGC AAGAGGTAAA ACGCATTCGC AGTGAAATGC AGAGCGTATT AGACACCCTT AACTTTGAAG GTGATATTAA TCAGTTTATT CGGTACTTAC GCACCTCCCC CGAGTTTTAT GCCACCAGTG CAGACGAGCT TTTAATGCGT GCTTCATATA TAGCCAAACG CATTGATGCC ACGCTCCCTC AGTTATTTTA CACTTTGCCC CGCGTGCCTT ACGGTGTGGC GCCGGTGCCT GATAATATCG CCCCTAAATA TACCACTGGG CGTTATATCG CCCCAACAAG AGACGACCAG CCGGGTTACT ATTGGGTGAA CACTTATGCG CTGGATAAGC GCCCTTTGTA TGCCCTGCCC GCGCTTACCT TGCACGAAGC AGTACCTGGT CATCATTTGC AAATATCGCT GGCAAGTGAA ATGCAAGACT TACCTCCTGT TCGCCGTTAC ACCTATATTT CAGCGTTTGG TGAGGGCTGG GGTTTATATT CTGAATTCTT GGGTAAAGAA GTGGGGATTT ACACCACACC TTATGAAGAA TTTGGCCGTT TAAGCTATGA AATGTGGCGC GCGTGTCGTT TAGTGGTCGA TACGGGTATG CATATGCAGG GTTGGTCGCG CCAACAAGCC ATTGACTACA TGCTGGAAAA CACTGCTTTA TCTGAACATA ATGTCACCAC AGAAGTGGAC CGCTACATAT CATGGCCAGC CCAGGCTTTA TCCTACAAAA TTGGTGAATT AACCATTAAA CGCCTACGTA AAAAAGCCGA AGACGCATTG GGCGACAAGT TCGACTTACG CGCCTTTCAC GATGCAGTGC TCGCCTACGG CTCAGTGCCC TTGTCGATTT TAGAACAGAA TATAGATATG TTTATTGAAG TAAACTCCAA ACATAAGTGA
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Protein sequence | MYKRSLMLAA VMLSFCFQAF GASEPSQSRK LSALLEQIWQ YQLSVDPIKA TRYRNNRYND KLKDLSPEAL QTHEQRNQQF LARLKGVDDS GLNHQQKINK LMQMRELQND IDLYRFNAHY MPITSESGFY SSLAFLPASA PFKTQQDYQN YLARLNQFPR YFAQQIAWMK KGIETGRVQP KSVLVGFDDT IKKFITEDLH DSQFFAPFKR LAESSFSSAV QASLYTQGET AINQSVWPAY QSFYDFLVNE YIPNAKQDIA ANTWQNGAAF YQNRSDYYTS TNLDVADIHQ TGLQEVKRIR SEMQSVLDTL NFEGDINQFI RYLRTSPEFY ATSADELLMR ASYIAKRIDA TLPQLFYTLP RVPYGVAPVP DNIAPKYTTG RYIAPTRDDQ PGYYWVNTYA LDKRPLYALP ALTLHEAVPG HHLQISLASE MQDLPPVRRY TYISAFGEGW GLYSEFLGKE VGIYTTPYEE FGRLSYEMWR ACRLVVDTGM HMQGWSRQQA IDYMLENTAL SEHNVTTEVD RYISWPAQAL SYKIGELTIK RLRKKAEDAL GDKFDLRAFH DAVLAYGSVP LSILEQNIDM FIEVNSKHK
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