| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0031 |
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| Symbol | |
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| ID | 4173576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 33931 |
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| End bp | 34749 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638053025 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_659618 |
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| Protein GI | 109896363 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00161886 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGACCGAT ACGCCGTTTT TGGTAATCCC ATTGAGCACA GTAAATCCCC TTTGATCCAC
ACGCTGTTCG CTAAACAGAC CCAACAAGTC ATTGAATACG GACGTCAACA ACCCGATTCT
AACGGGTTCA ATGATGCAAT CAATGCATTC TTTACCGAGG GCTTCATTGG AGCAAACGTT
ACTTCCCCAT TCAAACTTGA CGCATTTCGC TTTGCCGATG AACTGACACC ACGCGCTAGA
GCTGCTGAAG CGGTCAATAC GCTATATAAG CGCCAAGATG GTTCAATTTT GGGTGACAAC
ACCGATGGGG CTGGCTTAGT TCAGGATCTT CAGCGCTTAT GGGGGGAGTT AAACGGAAAG
CGTTTATTGT TGATTGGCGC TGGTGGGGCG ACTCGTGGAG TCATTCTTCC TCTACTCACT
GCTAAAGTAC AAAATATTCA TATTGCTAAT CGTACGGCGA GCAAAGCCCA GCAGCTAGCG
GATAGGTTTA AAAAAGAAGG GGTTATTACT GCTTCAGGCT TTAACGACTT ACCCGAAATA
CAGTTCGACC TGATTGTTAA CTGTACCTCT TCGAGCTTGG ATGGAGGGTT ACCCGAAATC
ACTCCGAGTA TTTTTATCAA TGCATCATAT GCTTATGACA TGACGTATAA AGCACAGGCA
ACATCTTTTA TGGTCTGGGC TCAAGAATGT ACCCCTAGTA TTAGAACGGC CGATGGACTG
GGCATGTTAG TGGGTCAAGC AGCCGAAAGC TTCTATGTTT GGCGAAAAGT TCGACCCAAA
ATAGAACCTA TTATTGAAAT TGTGCGAGAA ATGCTGTGA
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| Protein sequence | MDRYAVFGNP IEHSKSPLIH TLFAKQTQQV IEYGRQQPDS NGFNDAINAF FTEGFIGANV
TSPFKLDAFR FADELTPRAR AAEAVNTLYK RQDGSILGDN TDGAGLVQDL QRLWGELNGK
RLLLIGAGGA TRGVILPLLT AKVQNIHIAN RTASKAQQLA DRFKKEGVIT ASGFNDLPEI
QFDLIVNCTS SSLDGGLPEI TPSIFINASY AYDMTYKAQA TSFMVWAQEC TPSIRTADGL
GMLVGQAAES FYVWRKVRPK IEPIIEIVRE ML
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