Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0030 |
Symbol | |
ID | 4173575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 33101 |
End bp | 33784 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638053024 |
Product | OmpW |
Protein accession | YP_659617 |
Protein GI | 109896362 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3047] Outer membrane protein W |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.109784 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTCT TCAAAATAGT GTTATCCAGT TTAGCTTTAA CGGCCACCAT AATGGGCACA GCCAATGCCT ACGAACCAGG TGACATCATA GTACGAGCAG GTTTAACGAC AGTCGCTCCG GATGAATCAA GTTCAAATGT AACGGTGCAA AGCGTTGGAA ATGTGGGCAT GGGAGCATCA GTAAACAACA ACACTCAGTT GGGTCTGAAT GCGGTCTATA TGTTTACCAG CAACATTGGC TTAGAATTAT TAGCAGCCAG CCCATTCACA CATGATATTA CGTTGAATAA CACACTCGAT AATGAGCTAG GTTTAGGTGA CGGTAAATTA GCTGAAAGTA AACAATTACC TCCGACACTT AGTGCTCTTT ATTACTTCCC CGTTTCTGAA ACCATACAGC CGTATGTGGG GATTGGACTA AACTACACAG TTTTCTTCGA TGAGCAATTT GTGGGCAATA GAGAAGCTCA GTCTTTTAAT AATTTAAGTC TTGATGAGTC CTTTGGTATT GCCGCGCAAA TAGGTATGGA TTACAAGTTA GATGAACACT GGTTAATAAA TGCGTCGGTG CGCTATATCG ATATTGATAC AGAAGCAAAG TTTGACGTTT TGGATTTGCC TGCTCAGGTA TCAGTCGATA TCGACCCATG GGTATATTCG CTCATGCTAG GCTACAAGTT TTAA
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Protein sequence | MKVFKIVLSS LALTATIMGT ANAYEPGDII VRAGLTTVAP DESSSNVTVQ SVGNVGMGAS VNNNTQLGLN AVYMFTSNIG LELLAASPFT HDITLNNTLD NELGLGDGKL AESKQLPPTL SALYYFPVSE TIQPYVGIGL NYTVFFDEQF VGNREAQSFN NLSLDESFGI AAQIGMDYKL DEHWLINASV RYIDIDTEAK FDVLDLPAQV SVDIDPWVYS LMLGYKF
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