Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0027 |
Symbol | |
ID | 4173572 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 30779 |
End bp | 31339 |
Gene Length | 561 bp |
Protein Length | 186 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638053021 |
Product | DNA topoisomerase, type IA, Zn finger |
Protein accession | YP_659614 |
Protein GI | 109896359 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0551] Zn-finger domain associated with topoisomerase type I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAAAA TTGATCATTC TCTTTTCAGC ACTCATGAAT CCGCGTTTGA CCCCGGACCC TGTCCGGTTT GCAATGCGCC ATTGCAACTT CGACATAGTA AAAATGGTGC GTTTATCGGC TGTAGTGATT ACCCAAAATG TGAGTACAGC AAACCACTTC ATGATAGCGA CAATACTGAA TTAACCGTTA TTGAAGGCTC CCACTGTCCT GAATGCGAGT CCGAGTTGGT GATTAGAAAA GGGCGCTACG GTATGTATAT CGCTTGCAGC AATTTTCCTG AATGCCACTA CGTAAAATCA AATAAAACTC AAGACACAGA TAAGGTCGAA TGCCCCTCTT GCCATAAAGG GCACCTAACA AAGAGGGCCA ATAAATATGG GAAGAACTTC TATCCCTGTG ACCAGTATCC TCAATGTCAC TACGCACTGA ATTTTACACC AGTCGCCCAT GCGTGCCCCA AATGCGCTTG GCCTGTTATG CAGGAGAAAA AAGCAGCGGC AGGACTTATT TGGCAGTGCC CCGAGCGTAA ATGTGGGTAC AAGCAGCCTG CGCAGGAATG A
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Protein sequence | MFKIDHSLFS THESAFDPGP CPVCNAPLQL RHSKNGAFIG CSDYPKCEYS KPLHDSDNTE LTVIEGSHCP ECESELVIRK GRYGMYIACS NFPECHYVKS NKTQDTDKVE CPSCHKGHLT KRANKYGKNF YPCDQYPQCH YALNFTPVAH ACPKCAWPVM QEKKAAAGLI WQCPERKCGY KQPAQE
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