| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0021 |
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| Symbol | |
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| ID | 4173566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 24986 |
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| End bp | 26299 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053015 |
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| Product | sun protein |
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| Protein accession | YP_659608 |
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| Protein GI | 109896353 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAAT CAAAAGGTAG ATACCAGCAA AACTTGCGCG CCGATGCCGC CCGTGTGCTT
TTTCAAATAT TAGAGCAAGG TATGTCAGCT AGAGAATGCT TACCTGCAGC ACAACAAGAT
CATAATGAAA AAGACAAAGC ATGGTTGCAA GAAATGACTT ACGGCGTACT TCGCCAGCTG
CCCTTACTAC AGCACTGGCT AAGATTGTTG CTCGATAAGC CGTTAAAGAA AAATGTGAAA
GTGGTAGAGC ACCTAATTAT GCTTGGGTTT TATCAACTTG CCTTTTCTCG AGTGTCAACT
CATGCCGCTG TTTCTGAATG TGTGAATGCC TGCGCGCCAT TAAATGCGAT AGCAACCAAG
GGTTTAGTAA ATGCTGTTTT GCGTAATTTC ATACGCCAAG ATACGGCGCA TAATTTACCT
GATAATGAAC AAGTTTTGAG CGGACAGCCA AAATGGTTCT ATAAAAAGCT CGTTGATGCT
TACCCCGATA ATTACAAGAC CATACTAGAC GCAATGCAAG TAAAAGCACC TATTTGGTTG
CGCGTTAATA ATAAGCACAA GAGTACTGAT GAATATTGTC GACTTTTAGA CGACAGAGAT
GTGGCCTATG AGCGTCAAGC AACCCAGCCT CAAGGTATTA TTTTATCAAA AGGGTGCGAC
ATCACCACTC TGCCAGGTTA TGACGAAGGT TGGTTTGCGG TGCAAGATGG CGCAGCACAA
TTAGCCGCTG GGCTGCTAGG CTCACAACCT AATGATCGCG TATTAGACTG TTGTGCGGCG
CCGGGAGGCA AAACGTGTCA CATAATTGAG CTACAGCCCG ATTTAGCCAC ATGCGTAGCA
ATAGATATAG AAAGCAGCCG CCTTAAACGC ATCGAAGAAA ACTTAACTCG CTTAGGGCAT
CAAGCGACAC TCATTTGCGG TGACGCCAGC GAGCCAGCAT CATGGTGGGA CGGCCAGTTA
TTCGACCGCA TATTGCTAGA TGCGCCTTGC TCAGCCACGG GTATTATTCG CCGCCATCCA
GATATAAAGT GGTTGCGTAA ATCCAGCGAC ATTGACGTAC TTGTCGCGTT ACAAAGCAAA
ATAATTGATG CAATGTGGGC GTTGTTAAAG CCTGGTGGAA CTATGCTTTA CGCAACGTGT
TCAATTCTTC CAGCGGAGAA CCAGTTGCAA ATTAATGCGT TTTTAAATCG TACGCCTGAT
GCGCTGTTAG ACGATAAATT TGATAACGAC GCAGCACAAA AGCCAGGAAG ACAGATTTTA
CCTGGTGAAA AACAAATGGA CGGTTTCTAT TACGCTCGAC TGCTAAAAGC CTAA
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| Protein sequence | MSQSKGRYQQ NLRADAARVL FQILEQGMSA RECLPAAQQD HNEKDKAWLQ EMTYGVLRQL
PLLQHWLRLL LDKPLKKNVK VVEHLIMLGF YQLAFSRVST HAAVSECVNA CAPLNAIATK
GLVNAVLRNF IRQDTAHNLP DNEQVLSGQP KWFYKKLVDA YPDNYKTILD AMQVKAPIWL
RVNNKHKSTD EYCRLLDDRD VAYERQATQP QGIILSKGCD ITTLPGYDEG WFAVQDGAAQ
LAAGLLGSQP NDRVLDCCAA PGGKTCHIIE LQPDLATCVA IDIESSRLKR IEENLTRLGH
QATLICGDAS EPASWWDGQL FDRILLDAPC SATGIIRRHP DIKWLRKSSD IDVLVALQSK
IIDAMWALLK PGGTMLYATC SILPAENQLQ INAFLNRTPD ALLDDKFDND AAQKPGRQIL
PGEKQMDGFY YARLLKA
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