Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_3090 |
Symbol | |
ID | 4114889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | - |
Start bp | 3099621 |
End bp | 3101579 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 638037857 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_645809 |
Protein GI | 108805872 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGACGGA TACGCATCCC GGGGCCGGTG AAGGAGCGGG CCACCCGCCC GTTCCTCTGG CTGCAGCGCA GCTTCCGGCA GTCGCCGCCC GCCTTCCGGC GCGGGGCGGC GATGCTGGTG GACGCCGCCA TCGTCATGGA GTCCTTTGCG GTGGCGCTGC TGTTCCGGTT CGAGGGGGAC GTGCAGTGGG AGTTCTGGGT CTCCTTCTGG CCGTTCGCGC TGGCCGGGGC GGCGCTCTTC GTGCTGCTCC TGCACATAAA CGGCGTCTAC AAGAGCATCC TCCGCTACAC CGGCATCTAC CAGGGGGTGC GCATCGCGAG CGCCACCTCC ATCGCCACCG GGCTTCTGTT CATCGCCGAC GTGACCTTCG ACGAGGTGCT CGGCTACTAC CCCGCCCCGC GCTCGGTGGT CCTGGTGGGG GCGGCGCTGG CGTACATGCA GCTCGTTGCG GTGAGGCTCT ACCCGCGGGT CTTCTACGAG CTCTCGCTGC GGGAGGTGGG CCGCCGGAAG CGGACCGCCA TCGTGGGGAC GGGAGAGCAG GGGGTCGCGC TCGCGGGCCA CATCTGGCGC ACGGCGGCGA TGAACACGCA GGTGGTGGGC TTCGTGAGCG ACAGCCCCTC GGAGGTCGGC AACCACATCG AGGGGGTCCC GGTCGTCGGG ACCATAGACG GGATCGAGGA GATCATCGCG GGCCACGGCC TGGACCAGGT GATCATCGCG ACCCCGCAGG CCAGCCGGGA GCAGGTGGAC CGCATCTGGC GCACCTGCGT CCGCTCCCGG GTCGAGGTGA AGGTGATGCC GGACCTGGGG GAGCTGCTCG CCGAGGGGAC CATCCGCCTG AGGGAGCTGC AGATAGAGGA CCTCCTGGGC CGCGAGCCGG TGGACATAGA CCTCGAGGCC CTCTCCGGCT ACATAAACGG CAAGCGGGTA CTCGTCACCG GGGCGGGGGG CTCCATCGGC AGCGAGCTCT CGCGCCAGAT CTCTCGCCTC GGGCCCGCCA GGCTCGTGCT GATGGACCGC GACGAGAGCG GGCTCTACTA CCTGGGCGGG GAGCTGCGCC GGGAGGAGTT CAACGCCGCC GAGCTCGTCG TCGGGGACGT GACCAACCCC GAGCGGGTGG GCTACGTCTT CGAGCGGTTC CGGCCGCAGC TGGTCTTCCA CGCCGCCGCC TACAAGCACG TCCCCATGAT GGAGCTGCAG GCCACCGAGG CGATCATCAA CAACGTCTAC GGCACCCTCA ACGTGGCCCG GGCGGCCGGG GCCTACGGGG CGGAGAAGTT CGTCAACGTC TCCACCGACA AGGCCGTCAA CCCCGCCAAC GTGATGGGGG CCACCAAGCG GCTCTCGGAG ATGATCGTGC GGGAGATGGC CGGGGTGTAC CCGGAGACGG TCTACGCCTC GGTGCGCTTC GGCAACGTGC TCGGGAGCCG CGGCTCGGTG GTGCCGACCT TCCGCCAGCA GATAGAGGCC GGGGGGCCGG TGACGGTGAC GCACCCGGAG ATGATCCGGT ACTTCATGAC CATCCCGGAG GCGGTCTCCC TGATCCTGCA GGCCGGGGCG ATGGCCGAAG GATACGCGAC CTACGTGCTG GAGATGGGCC GCCCGGTGCG CATCCTGGAC CTGGCGCGCA ACATGATCGA GATAATGGGC GCCCCGGACG TCCAGATAAA GTTCGTCGGC CTGAGGCCCG GCGAGAAGCT GCGGGAGGAG CTCTCGGAGG AGGGCGAGCA GCGGCTGCCC ACCGGCCACC CGATGGTCTA CCGGCTGGTC TCGGAGAACG AGGGCCCGCC CGGCGGGGGC GACCTGCAGG AGCTGGTGGA CGCGATGGTC TACGAGGCCA GAAACCAGGA GGCCGAGCGG GCGGTGCGCC TCCTGCAGCG GGCGGTGCCG AACTACTCGG CCGCAGACCT CCCGGAGGTG GCCCCCCGGG AGGAGGACGG GCCCTTCTTC TCCTCCTAG
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Protein sequence | MRRIRIPGPV KERATRPFLW LQRSFRQSPP AFRRGAAMLV DAAIVMESFA VALLFRFEGD VQWEFWVSFW PFALAGAALF VLLLHINGVY KSILRYTGIY QGVRIASATS IATGLLFIAD VTFDEVLGYY PAPRSVVLVG AALAYMQLVA VRLYPRVFYE LSLREVGRRK RTAIVGTGEQ GVALAGHIWR TAAMNTQVVG FVSDSPSEVG NHIEGVPVVG TIDGIEEIIA GHGLDQVIIA TPQASREQVD RIWRTCVRSR VEVKVMPDLG ELLAEGTIRL RELQIEDLLG REPVDIDLEA LSGYINGKRV LVTGAGGSIG SELSRQISRL GPARLVLMDR DESGLYYLGG ELRREEFNAA ELVVGDVTNP ERVGYVFERF RPQLVFHAAA YKHVPMMELQ ATEAIINNVY GTLNVARAAG AYGAEKFVNV STDKAVNPAN VMGATKRLSE MIVREMAGVY PETVYASVRF GNVLGSRGSV VPTFRQQIEA GGPVTVTHPE MIRYFMTIPE AVSLILQAGA MAEGYATYVL EMGRPVRILD LARNMIEIMG APDVQIKFVG LRPGEKLREE LSEEGEQRLP TGHPMVYRLV SENEGPPGGG DLQELVDAMV YEARNQEAER AVRLLQRAVP NYSAADLPEV APREEDGPFF SS
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