| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_3005 |
|---|
| Symbol | |
|---|
| ID | 4115804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 3013191 |
|---|
| End bp | 3014351 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638037775 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_645727 |
|---|
| Protein GI | 108805790 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0509574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGGCA CTCTGCGGGT CTTGCTGGTG GGCGGGCCGA TGTACGACCC GCTGTACGGG
AGGATCGGGG AGTTCGAGGA GCGGACCGGG GTGCGGGTGG AGCGGGTCCT CTCCCGCGAC
CACCCCGACC TCAACGCCCG CATCGAGCGG GAGTTCGGCT CCGGGGAGGC GGACTACGAT
CTCGTCTCCA CCCACACCAA GTACGCGCCG GGGCAGCGCC GGTGGCTCAC CCCGCTGGAC
GGCGACCTGG CGCCGGAGGA GCTTGCGCCG TTCGCGGAGA GGACGCTGGA GCTCGCCCGG
ATAGGCGGCG AGCTCTACGG CCTCCCCCGC AACCTCGACG TCAAGCTCCT CCACTACCGG
ACCGACCTGG TAGGGTCCCC GCCCGCGACC TGGGAGGAGC TGCTCGAGGT CGCTGCGCGG
CTCAGGTCCG GGGGGCTCTA CGGCTTCGTC TTCCCCGGCA AGGAGAGCGG GCTCTTCGGC
CACTTCTTCG AGCTGCACGC CATGTACGGC GGCAGGATGT TCCGGGGGGA GGGGCCGCCC
GCGCCGCGCA TAAACGACGA GGCCGGGCGG CGGGCGCTCG GGCTCCTCGT CGAGCTCTAT
CGGCGGGCCG CCCCGGAGGA GACCCCGGAC TGGCACTACG ACGAGGTGGC CGCCTGCTTC
AGGGAGGGGC GGGCCGCCAT GAGCACCGAC TGGCCCGGAG GGTTCCACCT CTACGAGGGG
GAGGGCAGCA GGGTCAGGGG CCGCTACGGG CTCGCCCTCT ACCCGGAGGG CCCGGCCGGG
AGGTTCGTCT ACGCCGGCTG CCACTCCTTC GCGATTCCCC GCACCGTGCG GGACAGGGGA
GCGGCGGTGG AGCTGCTGCG CTTTCTCGCC TCCCGAGAGT CGCAGGCCCA CGAGGCCCGC
TTCGGAACCC TGCCGGCGCG GGAGGACGCC CTGGCGGAGG CGCGGGCGCA GGCCGGGCCC
GGCTCGCTCG CCGCCCGGAG GTGGGAGCTG CTGGAGGCGG CGCGCGAGGC CGCCATCATC
CCGCCCAAGC ACGAGAACTA CCCGGCGGTG GAGGAGGCCA TCTGGCGCGG CGTCCGGGAG
GCGCTGCTGG GCCGAAGTGG CGTCGAGGAG GCGCTGGCCC GCACCGAGGA GGCCGCCCGG
CGGGCGGCGG AGGGTTCGTG A
|
|---|
| Protein sequence | MGGTLRVLLV GGPMYDPLYG RIGEFEERTG VRVERVLSRD HPDLNARIER EFGSGEADYD
LVSTHTKYAP GQRRWLTPLD GDLAPEELAP FAERTLELAR IGGELYGLPR NLDVKLLHYR
TDLVGSPPAT WEELLEVAAR LRSGGLYGFV FPGKESGLFG HFFELHAMYG GRMFRGEGPP
APRINDEAGR RALGLLVELY RRAAPEETPD WHYDEVAACF REGRAAMSTD WPGGFHLYEG
EGSRVRGRYG LALYPEGPAG RFVYAGCHSF AIPRTVRDRG AAVELLRFLA SRESQAHEAR
FGTLPAREDA LAEARAQAGP GSLAARRWEL LEAAREAAII PPKHENYPAV EEAIWRGVRE
ALLGRSGVEE ALARTEEAAR RAAEGS
|
|---|
| |