Gene Rxyl_2988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_2988 
Symbol 
ID4115710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand
Start bp2994453 
End bp2995472 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content74% 
IMG OID638037758 
Product4-hydroxythreonine-4-phosphate dehydrogenase 
Protein accessionYP_645710 
Protein GI108805773 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1995] Pyridoxal phosphate biosynthesis protein 
TIGRFAM ID[TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.277355 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGGCCGC CCGTCGTAGC GCTGACCATG GGAGATCCCG CCGGCATCGG GCCGGAGATC 
ATCGCCCGGG CCTTCGCCGA GCCCGGCTTC TCGGAGGAGA ACCGCGTCGT CGTGGTCGGG
GACGGGGCGA GGCTCGAGCG CGCGGCGGCC CTGCTCCGGC TTCCGCTGCG GATCGAGACC
GTGAGCGGTC CCGAGGAGGC CCGCTTCCGG CCCGGCTCCG TCGACCTCAT CCCGGCGAGC
CGGCTCCCCG CCGACCTGCC CTTCGGCCGG CTGGACCCCC GGGCCGGGGA CGCCGCCTTC
GAGTACCTGA GGCGGGCCGT GGGGCTCGCG CTCGAGGGGA GGGTGAGCGC GGTGGCGACC
GCGCCCCTCA ACAAGGAGGC GCTGCACCTG GCCGGGCACC GCTACCCGGG GCACACCGAG
ATCCTGGCCG AGCTCACCGG CACCAGAGAC TACGCCATGA TGCTCGTCGC CGACGGGCTG
CGGGTCATAC ACGTCTCCAC CCACGTCCCC CTGCGGGAGG CCATAGAGCT GGTGCGCCCC
GAGAGGGAGC TTGCGGTCAT CCGGCTGGCG CACGGCGCGA TGCGCCGCAT CGGCCTCGAG
AGCCCCCGGG TGGCGGTGGC CGGGCTCAAC CCCCACGCCG GGGAGAACGG GCTCTTCGGG
GAGGAGGACC GAGAGCACAT AGCCCCGGCG GTGGAGAGGG CCCGCTCCGA GGGGATAGAC
GCCAGCGGCC CGTGGCCGCC GGACACCGTG TTCCTGCGGG CCCGGCGGGG CGAGTTCGAC
ATCGTCGTGG TGCAGTACCA CGACCAGGGG CACATCCCGG CCAAGCTTCT GGGCTTCGAG
GGCGGGGTGA ACGTGACGGT GGGGCTGCCG TTCTTCCGCA CCAGCGTGGA CCACGGCACC
GCCTTCGACA TCGCCGGCAC GGGGAGGGCC GACCACTCCA GCCTGCTGGC GGCGCTCCGC
CTGGCGCGGG AGCTCGCCGG GGCGCAGGAG GAGGATCGGC AGAAGAAGAG GAGGGGTTGA
 
Protein sequence
MRPPVVALTM GDPAGIGPEI IARAFAEPGF SEENRVVVVG DGARLERAAA LLRLPLRIET 
VSGPEEARFR PGSVDLIPAS RLPADLPFGR LDPRAGDAAF EYLRRAVGLA LEGRVSAVAT
APLNKEALHL AGHRYPGHTE ILAELTGTRD YAMMLVADGL RVIHVSTHVP LREAIELVRP
ERELAVIRLA HGAMRRIGLE SPRVAVAGLN PHAGENGLFG EEDREHIAPA VERARSEGID
ASGPWPPDTV FLRARRGEFD IVVVQYHDQG HIPAKLLGFE GGVNVTVGLP FFRTSVDHGT
AFDIAGTGRA DHSSLLAALR LARELAGAQE EDRQKKRRG