Gene Rxyl_2421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_2421 
Symbol 
ID4115340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp2434533 
End bp2435183 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content71% 
IMG OID638037200 
Productpeptidase C60, sortase A and B 
Protein accessionYP_645160 
Protein GI108805223 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3764] Sortase (surface protein transpeptidase) 
TIGRFAM ID[TIGR01076] LPXTG-site transpeptidase (sortase) family protein 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGGGCCG AGCGTTTCGG AGACTGGACG AGCGGCGGGC GCCGGCGGCG CAGGAGGCGG 
AGGGGGGGAG GGCGGACCTT CCACCGGCGG CGGATGATCG CCGCCTGCGG CGTCGGACTG 
GTGCTCTTCG CCTTCGCCTG GCTGCTCGTG GACATGCGGG TCTCGGGCCA CGCCCGCGTC 
GCCTCAGCCC CCGCGGACCA CACGCTGCAC CTGACGGTCC CGAAGATGAA GCGGGTGAAG 
AACATCCCGG TCTACACCGC ATCCTCCACG AACGAGGCCG CCCTGAACGC GGGGGCCATA 
CACCTCAAGG GCACCGGCTT CCCCTGGGAG CGGGAGGCGA ACGTGTACAT CGCCGGCCAC 
CGGCTCGGGT ACTGGGGGAC CGGCAGCTTC CTGGTCTTCT ACGACCTGCA CAAGCTCAGG 
GAGGGGGACA AGGTGGTGCT CCGGGACGCC GAGGGCCGCC GGTACGTCTA CAGCGTGTTC 
CGCAGGCTGG TCGTCCCGCC GGACAGAACC TCGGTGACGC GCCCCATCCC CGGCAAGAAC 
ATCGTCTCGC TGCAGGCCTG CACGCTGCCG GACTACTCCA GGCGCCTCGT GGTGCAGGCC 
GAGCTGGTGG AGGTGGTGGA GCCCCCGGTG CAGGCGAGCG CCGGGGGCTA G
 
Protein sequence
MRAERFGDWT SGGRRRRRRR RGGGRTFHRR RMIAACGVGL VLFAFAWLLV DMRVSGHARV 
ASAPADHTLH LTVPKMKRVK NIPVYTASST NEAALNAGAI HLKGTGFPWE REANVYIAGH 
RLGYWGTGSF LVFYDLHKLR EGDKVVLRDA EGRRYVYSVF RRLVVPPDRT SVTRPIPGKN 
IVSLQACTLP DYSRRLVVQA ELVEVVEPPV QASAGG