Gene Rxyl_2308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_2308 
Symbol 
ID4117527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand
Start bp2319383 
End bp2321668 
Gene Length2286 bp 
Protein Length761 aa 
Translation table11 
GC content70% 
IMG OID638037089 
Productpenicillin-binding protein 1A 
Protein accessionYP_645049 
Protein GI108805112 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0308818 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCGGC GGCGCCGGCG GATGCGCAGG AGGGGCAGCC TCTGGTCCCG GGTCAGGACA 
GCGCTCCTGG TCCTCGCGGG GATCACGGCC CTCAGCCTCG CCGGGCTTCT GGCCAGCTTC
TCCTACGCCT ACTACGCGCT GGCCGACGAC CTCCCGGACC TCGACGACTA CCGCTCCGTG
GAGCTGGCCC AGACCTCCGT CGTCTACGAC GCCGACGGCA ACGTCGTGGA CCAGCTCTAC
GGGGTGCAGA ACCGCTTCGT GGTCGAGCTG GACGAGATAG ACCCCACCCT GCGGAACGCG
GTGGTCGCCA TCGAGGACCA CCGGTTCTAC CAGCACCGGG GGGTGGACTT CCGGGCCATC
CTGCGGGCCG CCCGCACCAA CATAGCCACC ATGTCCATCC GCGAGGGCGG CTCCACCATC
ACCCAGCAGC TCATAAAGAA CACCTACATA GCCCAGGAGC AGCGCTCCGT CCCCAGCTTC
CAGCGCAAGA TCAACGAGGC CGCCCTGGCC TGGCAGTACG AGAAGGAGCA CTCGAAGCGG
GAGATCCTGG AGCAGTACCT GAACACCGTG TACTTCGGGC GGGGGGCCTA CGGGGCGGAG
GCCGCGGCGA GGACCTACTT CAACAAGAGC GCCGAGGACC TCACGCTCCC CGAGTCCGCG
CTGCTGGCCG GGATCATCAA CCTCCCGAGC GCCTACGACC CGTTCACCGA CCCCGAGAGC
GCCAGAAAAC GGCGCAACGT GGTGCTGGAC AGGATGCTCC GGTACGGCTA CATAACGAAG
GAGGAGCACG ACCGGGCGGT CCGGGCGCCG ATAGAGCTCA GCCGCGGCCG GATAGAGCCG
CGCAACGACA ACGAGTACTT CCTCGACGCG GTGCGCAAGG AGCTCGCCCG CGAGTACGGC
GAGGAGATGG TCTACGAGGG GGGGCTGAAG ATCTACACCA CCCTCGATCC CGACCTGCAG
GAGCTGGCCT CGCGCGCCGT GGACGCGGTG GTGAACCCGG AGGCCGGCGA CCCCTCGGCG
GCCCTGGTCT CCATAGACCC GAACACCGGG GCGGTGCGGG CGATGGTCGG CGGCTCGGAC
TTCGACCGGC TGAAGTTCAA TCTGGCCACC CAGGCGCGCC GGCAGCCGGG CAGCTCCTTC
AAGCCCTTCG TGCTGGCGGA GATGGTGGAC CAGGGCTACT CGCCGCAGAG CGTGTACGTC
TCCAGGCCGC TGCGCATCCC GATGCCCCCG GGCTCGGCCG AGCCTTACTA CGAGGTCTCC
AACTACGCGG ACGTGTTCCG CGGCCCGATC ACGGTGGAGG AGGCCACCGC CCAGTCGGAC
AACACGGTCT TCGTGCAGCT GGCGATGGAT TTGGGGCTCG AGAACGTGGT GGAGATGGCC
CACGAGCTGG GGATAAAGAG CGAGCTCGAG CCCTACCCCT CGACCGCCAT CGGCGGGCTC
GGCCAGGGCG TGAGCCCGCT GGAGATGGCC TCCGCCTACT CCACGTTCGC CAACGGCGGG
GTGCACATGG AGCCCTACCT GATCGAGAAA GTCACCACCG AGGAGAACGG CCGGGAGGTC
GTCCTGGAGG AGCACGAGCC TGAGGGGGAG CGGGTGCTGA GCCGGGACGA GGCCGCGGTG
GTCACCGAGA CCCTGCGGGC GGTGGTGGAG CGGGGGACGG CGAGCCTGTT CCACGACCTG
GACGCCGAGC TCGGACGCCC CTCGGCAGGC AAGACGGGGA CCACCGAGGA GTTCGCCGAC
GCCTGGTACG TGGGCTACAT CCCCCAGCTC GCCACGAGCG TCTGGGTCGG CTACCCGGGG
GAGCGGCGCC CGATGGTGAA CATCCGGGGC TACTCGGAGA TCAACGGTGA GAACTTCCCG
CTGGACATCT GGTCGCTGTA CATGCAGGGC GCCGTGCAGT ACTTCCCCGT CCAGCAGTTC
GACGTGCCGA GCCCGGACCT GGACCTGCGG GTGAGAAACG CGGGCCTGCT GGAGACCACC
GGCGAGGGGG AGACGACCTC GGGCGCGGCG GACGAGGAGA CCACCGGCCT CGTGGAGGAC
CTGCTGGACG GCGTGCTCGG CGAAGACGGC CGTGAAGAGG AGGGCCCCGC CCGCGAGCGC
CCGCGAACGC CCCCGCAGCG ACCCTCGCCC CAACCGCCGC CCCCGCCACA GCCCGCCCCC
CAGCCGGCGC CCCAGCCCGC CCCGGCCCCG CAGCCCGCCC CAGCCCCGCA GCCGGCCCCG
GCCCCGCAGC AGCCCGGCGG CTTCCCCGGC GGCGACGCCT TCGACAGCTG GGTCTTCGAG
GACTAG
 
Protein sequence
MSRRRRRMRR RGSLWSRVRT ALLVLAGITA LSLAGLLASF SYAYYALADD LPDLDDYRSV 
ELAQTSVVYD ADGNVVDQLY GVQNRFVVEL DEIDPTLRNA VVAIEDHRFY QHRGVDFRAI
LRAARTNIAT MSIREGGSTI TQQLIKNTYI AQEQRSVPSF QRKINEAALA WQYEKEHSKR
EILEQYLNTV YFGRGAYGAE AAARTYFNKS AEDLTLPESA LLAGIINLPS AYDPFTDPES
ARKRRNVVLD RMLRYGYITK EEHDRAVRAP IELSRGRIEP RNDNEYFLDA VRKELAREYG
EEMVYEGGLK IYTTLDPDLQ ELASRAVDAV VNPEAGDPSA ALVSIDPNTG AVRAMVGGSD
FDRLKFNLAT QARRQPGSSF KPFVLAEMVD QGYSPQSVYV SRPLRIPMPP GSAEPYYEVS
NYADVFRGPI TVEEATAQSD NTVFVQLAMD LGLENVVEMA HELGIKSELE PYPSTAIGGL
GQGVSPLEMA SAYSTFANGG VHMEPYLIEK VTTEENGREV VLEEHEPEGE RVLSRDEAAV
VTETLRAVVE RGTASLFHDL DAELGRPSAG KTGTTEEFAD AWYVGYIPQL ATSVWVGYPG
ERRPMVNIRG YSEINGENFP LDIWSLYMQG AVQYFPVQQF DVPSPDLDLR VRNAGLLETT
GEGETTSGAA DEETTGLVED LLDGVLGEDG REEEGPARER PRTPPQRPSP QPPPPPQPAP
QPAPQPAPAP QPAPAPQPAP APQQPGGFPG GDAFDSWVFE D