| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2305 |
|---|
| Symbol | |
|---|
| ID | 4117524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2315760 |
|---|
| End bp | 2317298 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 638037086 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
|---|
| Protein accession | YP_645046 |
|---|
| Protein GI | 108805109 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.98503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTGCGAG GATCTTTCGA GGGTGTTTCG GCGAGGTGCG CGCCGCTTGC TACACTACCG
GGCATGGCGG TGGAGCGCGA GGAGCTGAGG CGGGTTTTGG GCGTGGAGGT GCCCGCGGGC
GTGGGGAGGG TATGCGGGGT CACCCACGAC TCGCGGGAGG TCGAGCCGGG CTTCGCCTTT
GTGGCGGTAC CGGGCTTCAA GCGGGACGGG GTGGAGTTCG TGCCGGAGGC GCTGCGCCGG
GGGGCGGCGC TCGTGGTCGC GGAGCGGGAG GTTCCCGAGG CTCCTGTCGC GGTGGTGCCC
GATGCGAGGG CGGCGCTCGC GGCCCTCGCC TGCGCCTTTC ACGGCCATCC CTCGCGCCGG
ATGGAGGTCT ACGGGGTGAC CGGGACGAAC GGGAAGACCA CCACCTGCTA CGCGCTGCAC
GCGGTGCTCG CGGGGGCGTT CGGGGAGGAG CGCTGCGGCC TCATGACCAC GGCGGAGGTG
GTCGCCGGCG GCGAGAGGAG ACCTGCGGTC AGGACGACCC CGGAGGCCAC CGAGGTGCAG
GCGGCGCTCG CCGGGATGCG CGAGCGGGGG GTGGAGCGGG TGGCGATGGA GGTCTCCTCG
CACGGGATCG CGCTGCGGCG GGTGGAGGGG ATCCGCTTTG CGGGCGCCGT CTTCACCAAC
CTCAGCCGGG ATCACCTGGA CCTGCACGGC ACCATGGAGG AGTACTACCG GACCAAGCGG
CGGCTCTTCC TCTGGGCCCG GGGGCCCAAG CTCTCGAACG CCGACGACGC GTGGGGCCGG
CGGCTGGCCG GGGAGGTGGA GGGGGTGAGG ACCTTCGGCT CCGCCGTGGG GGCGGACTAC
AGGATCGAGG GCGTACGCCC CTCGGGAGCG GGCACGCGCT TCGTGCTGCG GCGCGGGGAG
GAGGCGCTCC GGATCGAGGT TCCGCTCTTC GGGGACTACA ACGTGCAGAA CGCGGCCGGG
GCCGCGGCGC TCGCCCTGGA GCTCGGGGTG CCCGGGGAGA CCGTTGCCCG GGCGCTGCGC
GGGATGCCGC AGGTTCCCGG GCGCTTCGAG CGGGTGGGCG GTCCGGGCTT CGAGGTGATC
GTGGACTACG CCCACACCGA CGTGGGGCTG GAGGCCGTTC TGCGGGTGGC GCGCGAGGTG
GCCCGCCGGG GGCGGCCGGG GAGGGTCATC TGCGTCTTCG GGGCGGCCGG GGAGCGGGAC
GGGGCCAAGC GGCCGCTCAT GGGGCGGGTG GCCTCCCGGC TCGCCGACCG CGGCATCATC
ACCACCGACG ATGCCTACTC GGAGGATCCC GAGAAGATCG CCCGGGAGGT CGCCGCCGGC
GTCGAGGATG GGCGCCTCGA GATCGTGCTG GACCGCCGGG AGGCGATCCG GCGGGCGCTC
TCGGAGGCGG GGGAGGGCGA CGTGGTCGTC GTGGCCGGCA AGGGGCACGA GCGGGTGCAG
CACCTTCCCT GGGGGGACGT GCCGTTCCAC GACGCCACCG TGATACGCGA GATCCTGGAG
GAGCGTGATC CTTGCAGAGA GAGAACAAGA GAGAGGTGA
|
|---|
| Protein sequence | MLRGSFEGVS ARCAPLATLP GMAVEREELR RVLGVEVPAG VGRVCGVTHD SREVEPGFAF
VAVPGFKRDG VEFVPEALRR GAALVVAERE VPEAPVAVVP DARAALAALA CAFHGHPSRR
MEVYGVTGTN GKTTTCYALH AVLAGAFGEE RCGLMTTAEV VAGGERRPAV RTTPEATEVQ
AALAGMRERG VERVAMEVSS HGIALRRVEG IRFAGAVFTN LSRDHLDLHG TMEEYYRTKR
RLFLWARGPK LSNADDAWGR RLAGEVEGVR TFGSAVGADY RIEGVRPSGA GTRFVLRRGE
EALRIEVPLF GDYNVQNAAG AAALALELGV PGETVARALR GMPQVPGRFE RVGGPGFEVI
VDYAHTDVGL EAVLRVAREV ARRGRPGRVI CVFGAAGERD GAKRPLMGRV ASRLADRGII
TTDDAYSEDP EKIAREVAAG VEDGRLEIVL DRREAIRRAL SEAGEGDVVV VAGKGHERVQ
HLPWGDVPFH DATVIREILE ERDPCRERTR ER
|
|---|
| |