| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2219 |
|---|
| Symbol | |
|---|
| ID | 4117450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2231045 |
|---|
| End bp | 2232181 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638037009 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_644972 |
|---|
| Protein GI | 108805035 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGAAGA GGCGCGGTAA TGGGGAGGGT TCGATCTCCC GCCACCCGAA GAGGGATCTG
TGGATGGTCC GATACACGGT CGAGACGCCG AGCGGCACCA AGCGCAAGAC CGCCTACGGC
AAGACGCGGG CGGAGGTCCG CGACAAGCTG GCGAAGGCGA TGTCGGATCG CGCCGACGGC
CTCCTCTACG ACGACAAGAA CATGACCGTT GGTGAGTACC TCGACAGGTG GCTCAAGGGC
TCTGTGCGCG GCTCCGTTCG GCAGAGCACC TTTGACCGCT ACGAGATCGC CGTCCGCGTC
CATCTCAAGC CCGCCCTTGG CAGGCACAAG CTCAGGAAGC TCACCCCCGC CCACGTCGCC
GCCCTTTACC AGGACCGCCT CGACGCCGGC TATGCTCCCG CGTCCGTCAA CAAGCTCCAC
GTCACGTTGC ACAAGGCCCT CGACCAGGCT GTCAGGTGGC ACATGGTCCC GCGCAACGTC
GCCGAGGTAG TCAAGGCTCC CAGGCCCACC GCCAGAGAAG AGATGCGAAC CCTCTCCGCC
GGGGAGACGC GCCGCCTGCT CGAAGCCGCG CGCGGCGACC GTCTCGAAGC CCTCTACGTG
CTCGCCGTAA CCACCGGCAT GCGCCAGGGG GAGCTCCTAG CCCTCAAATG GCAGGATGTG
GATCTGGAGA ACGCCACCGT GAGCGTCCGG CGCACCATCA CCAAGAGCGG GGGCAGGTTG
CTCCTCGGCG AACCGAAAAC GAGCAAGGGC CGCCGCACCA TCCATCTCAC CGGGCCCGCC
GTCCAGGCGC TCCGCGAGCA CCTGTCCCGG CAGATGCAGG AGATCCAACA CCTCGGCGAC
CTCTACCGGG ACGAAGGCTT CATCTTCACC AGCGAGAGCG GTACTCTGAT CAACCCTTCC
AACCTGCGTC AACGGTCCTT CACCCCGCTA CTCAAAAAGG CCAGGCTGCC CCAGATCCGC
TTCCACGACC TCAGGCACAC CTGCGCCACG CTCCTCCTCT CCCGCAACGT CCACCCCAAA
TACGTCCAGG AGCTTCTCGG CCACTCAAAC ATCGCCATCA CCCTCGACAC CTACAGCCAC
GTCATACCGG GCATGGGCGA CCATACCGCG AGGGCGATGG AAGACGTGCT ACAGTAG
|
|---|
| Protein sequence | MTKRRGNGEG SISRHPKRDL WMVRYTVETP SGTKRKTAYG KTRAEVRDKL AKAMSDRADG
LLYDDKNMTV GEYLDRWLKG SVRGSVRQST FDRYEIAVRV HLKPALGRHK LRKLTPAHVA
ALYQDRLDAG YAPASVNKLH VTLHKALDQA VRWHMVPRNV AEVVKAPRPT AREEMRTLSA
GETRRLLEAA RGDRLEALYV LAVTTGMRQG ELLALKWQDV DLENATVSVR RTITKSGGRL
LLGEPKTSKG RRTIHLTGPA VQALREHLSR QMQEIQHLGD LYRDEGFIFT SESGTLINPS
NLRQRSFTPL LKKARLPQIR FHDLRHTCAT LLLSRNVHPK YVQELLGHSN IAITLDTYSH
VIPGMGDHTA RAMEDVLQ
|
|---|
| |