| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2017 |
|---|
| Symbol | |
|---|
| ID | 4115907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | + |
|---|
| Start bp | 2041814 |
|---|
| End bp | 2043508 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 638036805 |
|---|
| Product | CdaR family transcriptional regulator |
|---|
| Protein accession | YP_644776 |
|---|
| Protein GI | 108804839 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.294249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCCG GCGGCATACC CCTCCCGGAC TTCGCCCGCC TCCTGGCCGG GGAGGCGCGG
GCCGAGTGCC TCTCCGCGGG GGACCCCGGC CGCCGGGTGC TCGGGATCTC CGTGGAGGAG
CCGGTGGAGG GCTGGCTCGG CCCGGACGAG GCCGCGGTGA CGGACCGCGC GGAGCTGGAC
GCCTCCTTCC TGAAGTCCCT CGCGGGGAGC GGCTGCCCCG CGGTGGTGTG GCGCGCCCCC
CCGGAACGGA CGCCGGGGGA GGCGCCGCAG CTCGCCGCCG GCCTGGGGCT CGCCCTGTTC
CGAGTCTCCC CCGGGGTGCC CCTCCGCCGC GTGCTCGGCG CCCTCTCCGA CGGGGAGGGG
CTTTTGCGCC TCTCCCACCG CGCGGTGCGC GAGCTGCTGG AGGGCGCCGG GGAGTGGACC
CCCGCAGAGG CGGCGGAGCG GATCTCCCGG CTCCTCGGCC GGCGCGTGGT GGTCGAGGAC
GCCGTGGGGC GGCTCGTCGC CGGCGGGGAG GACAACCCCC TGCGGGAGCT GCTGGAGAGG
GAGGAGCTGC GGGCCTCCCG CCCCTCCGGG GTGGACGAGA CCCGCCGCGA CCGGAGGGAC
CGCTACGCCC GGCTGCCGGA CGGCTTCCTC TCGGTGCCCG TGGAGCGCTG GCGGGTGGCG
GGGCGGGAGC TCTTCTGGGT CCCGCTCGGC GGGGGGAGCC CGGCGGGCTA CCTGTGGGTG
GACTGCGAGG GCTCGCCGCT CGGCACCGGG GACGTGATCG TGCTCTACTG GGCCCGCCGG
GTGTTGGAGG GGGCGCTGGG CCGGGAGAGG ATCCGGCTGG AGACCGAGCT GGGGATGCGG
GGCGACCTCC TCGACGACCT CATCGCCGGC CACTACGGCT CCGTGGACCT CCTGCTGCAG
CGGGCGCTCT ACCTCGGGGC CGACCTCTCC CGCGGGGCCC TGGCCGCGAT CGTGGACATC
GACGAGTTCG CCCGCTACCT GGAGCGCCGC CGGCTCAAGG AGCCCGCCGT CCAGGAGCTC
AAGCGCCGCC TCGCCGACGC GGTGCGCCTG CAGGCCCGCC AGCTCTTCTC CGGCTTCCTG
CTCGGCCCGC GGTCGGACAA CGTGATCCTC TTTCTCCCCC CCTCCCCGGA GGCCCCCCCC
GACACCCTCC GGGAGCGGGC GCTCGAACTC TCCGGCAGGG TGCAGCGCTA CGTAAGGGGG
CTCCTGCCGG ACCTCACCGT CTCGGTGGGC ATCGGCCGCT ACCGGGAGGA CCCGGCCGAA
CTGCCGGAGG CCTACTCGGA GGCCGAGATG GCGCTCAGGA TCGGCCACCG GATAAAGGGC
CCCTCCTCGG TCTCCACCTT CGAGGAGACC GGCACCTACA AGCTGCTCTT CCGGGTGCTG
CAGGAGAGCC CGGAGGAGCT GGAGTCCTTC TACGCCGAGA CCGTGGAGCC GGCGGTCCGC
TACGACCTGC GCTACGGCAC CGGTCTGGTG CAGACCCTAG CCTCCTACCT CCGCAACGAC
GCCTCCACCT CCAGGACCGC CTCCGAGCTC TTCACCCACC GGCACACCAT CCGCTACCGG
CTGGAGAGGA TAAGGGAGCT CACCGGCCTG GACGTGGACC GGAGCGAGGA CCGCGAGCGC
CTCGCCCTGG GGATAAAGGC GATGCAGCTC CTCGGCCGCG CCCCCGAGGA ACCCTCCCCC
CTCTCCGACC GCTGA
|
|---|
| Protein sequence | MSPGGIPLPD FARLLAGEAR AECLSAGDPG RRVLGISVEE PVEGWLGPDE AAVTDRAELD
ASFLKSLAGS GCPAVVWRAP PERTPGEAPQ LAAGLGLALF RVSPGVPLRR VLGALSDGEG
LLRLSHRAVR ELLEGAGEWT PAEAAERISR LLGRRVVVED AVGRLVAGGE DNPLRELLER
EELRASRPSG VDETRRDRRD RYARLPDGFL SVPVERWRVA GRELFWVPLG GGSPAGYLWV
DCEGSPLGTG DVIVLYWARR VLEGALGRER IRLETELGMR GDLLDDLIAG HYGSVDLLLQ
RALYLGADLS RGALAAIVDI DEFARYLERR RLKEPAVQEL KRRLADAVRL QARQLFSGFL
LGPRSDNVIL FLPPSPEAPP DTLRERALEL SGRVQRYVRG LLPDLTVSVG IGRYREDPAE
LPEAYSEAEM ALRIGHRIKG PSSVSTFEET GTYKLLFRVL QESPEELESF YAETVEPAVR
YDLRYGTGLV QTLASYLRND ASTSRTASEL FTHRHTIRYR LERIRELTGL DVDRSEDRER
LALGIKAMQL LGRAPEEPSP LSDR
|
|---|
| |