Gene Rxyl_1990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1990 
Symbol 
ID4117578 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp2009817 
End bp2010737 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content65% 
IMG OID638036777 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_644749 
Protein GI108804812 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID[TIGR02762] type IV conjugative transfer system protein TraL 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.306567 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCACCC AGACCCAGAG CAAGAGAAAG CGGCGGGGAG GCATCCTGCG GGAGGAGTTC 
TCCAACCCCG AGCGGCGGCT CGCCTACTAC ATGGTGCTGC CGACGCTCCT CATCATCCTG 
GTCGTCGCCT TCTTCCCGGT CGTCTCCTCG ATATGGCTGA GCCTGCACCA GGCCACGGTG 
ACCAACACCG GGGCCTTCGT GGGGCTCGAG AACTACATCG AGATGTTCCA GAACGACGAC 
TTCATCGAGG GGCTCACCAA CACCGTGATC TTCACGGTGG TCAGCGTGGG GCTGGAGTTC 
ATCATCGGGC TCGGCATAGC GCTGGCCATA AACCGGGCCT TCCGGGGGCG CGGGCTGGTG 
CGGGCCGCGG TGCTGGTCCC CTGGGCGTTC CCCACGGTGA TCTCTGCGGT CATGTGGCGG 
CTGATGTTCC AGGACCAGGT CGGGATCATC AACTACGTCG CAAACGCCCT CGGGATCATC 
AGCCAGCCCA TTCTCTCCGA CAGGACGCTG CTGCTGATCG CGGCGATCCT GGTGGACGTG 
TGGAAGACCA CGCCGTTCAT GGCGCTCCTC CTGCTCGCCG GGCTGCAGGT CATCCCCGGC 
GACGTCTACG AGGCGGCCAA GGTGGACGGG GCGAACGTGC TGCAGCGGTT CTTCAGCATC 
ACGCTGCCGC TGCTGAAGCC CGCCATCCTG GTGGCGGTAC TCTTCCGGAC GCTCGACGCC 
TACCGGGTCT ACGACCTGTT CTGGGCGATG AGCAACCGGG AGCTGGAGTC CCTCTCCACC 
TTCGTGTACA AGGCGGTGAG GGTGAGCCAG CTGCTCTTCG CGCAGGGCAA CGCGGCGGCG 
GTGTTCGTGT TCGTCACGTC CTTCCTGATC GCGCTGCTGT TCATAAAGGG CTTCGGCATG 
CAGACTTCCA CGGGGGACTA G
 
Protein sequence
MTTQTQSKRK RRGGILREEF SNPERRLAYY MVLPTLLIIL VVAFFPVVSS IWLSLHQATV 
TNTGAFVGLE NYIEMFQNDD FIEGLTNTVI FTVVSVGLEF IIGLGIALAI NRAFRGRGLV 
RAAVLVPWAF PTVISAVMWR LMFQDQVGII NYVANALGII SQPILSDRTL LLIAAILVDV 
WKTTPFMALL LLAGLQVIPG DVYEAAKVDG ANVLQRFFSI TLPLLKPAIL VAVLFRTLDA 
YRVYDLFWAM SNRELESLST FVYKAVRVSQ LLFAQGNAAA VFVFVTSFLI ALLFIKGFGM 
QTSTGD