| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1604 |
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| Symbol | |
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| ID | 4116351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 1627273 |
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| End bp | 1628880 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638036404 |
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| Product | RNAse R |
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| Protein accession | YP_644378 |
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| Protein GI | 108804441 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0268007 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCGG TGCTGGTCCG CCGGGGCAAG TACTCGGTCG CCGACCCCCT CTTCGTGGAC
GAGCGGCGGC CCATCCTCGT CGCCCGCAAG CTGCGCCGGG GGGCGGAGGC CGGGGACCTC
GTGCTGGTGC GGGCCCGGGA GAGAAAGGGC TCGCTGCGCG GCGAGGTGGT CCGGGTGATC
GGGCCGTCCT CCGACCCGCG CAACGTCTAC GAGGCCCTCT TCGCCTCCAT CGGGGTCTCG
CGCTCCTTCC CCCGCGGGGT GGAGGAGGAG GCCGAGGCGG TCGCGGGCCG CAGCTTCGGC
GAGCGGCGGG ACCTGCGCCG CCTGCCCACG GTGACCATCG ACGGCGAGGA CGCGAAGGAC
TTCGACGACG CCATCTCCAT CCTCCGGGAG GACGGCGGCT ACCGGCTGTG GGTGCACATC
GCCGACGTGA CCCACTACGT GGACCCCGGC GGGGCGCTCG ACCGGCAGGC CCTCTACCGG
GGCAACTCCG TCTACCTCCC GGGCACCGTG GCCCCGATGC TTCCCGCCCG GCTCTCCGCG
GACGTGTGCT CCCTGCGCCC GCACGCGGAC CGGGCTGCCG TGACGGTCGA GATCTCCGTC
TCCGGCGAGG GAGAGGTGCG GGGCTGGAAG GTCTACCGCA GCCTCATCTG CAGCGACGCC
CGGCTCACCT ACGAGGCCGT GGACGCCTTT CTGGAGGGTC GGGGCGAGAT AGAGCAGCCA
GAGCTCGTGC GCACCGCCTT CGAGCTCTCC CGGAGGCTCA AGACCAACGC CGCCGTGAGG
GGCAAGCTGG AGCTCGAGAG CCGGGAGCCC GAGTACGAGG TCGACGAGGA GGGCGTCCCC
GTCGCCGCCT CGATGCGCCC CTCCACGCCC GCCCGCGAGC TGATAGAGGA ACTCATGATC
CTGGCCAACG TCTGCGTCGC GAGGGAGCTG CGCAGGAGGC GCGGGGCGGT CTTCCGGGTG
CACGAGCGCC CCTCCCCGGA AGACCTCGAG CTGCTCGCCG AGCGCCTCGC TGCCGTGGGG
GTGCGGGTCG AGCCCACCCC CGAGAATCTG GGCACAATCG CCCGCATGCT CAAGTCGCGG
GCGCTGGGTT ACCTCGTGCT CCGCTCCATA CCCCGGGCCC TCTACTCGCC CGGCAACGTG
GGGCACTACG GGCTCGCGCT CGAGGACTAC ACCCACTTCA CCTCGCCCAT CCGGCGCTAC
GCCGACGTGC TCGTCCACCG GGCGCTGCTC GGGGACGAGC TGCCCGAGAA CCTCCCTGAG
GTGGCCGAGC ACATCTCCGA GAGGGAGTGG CAGAGCATGA TCTGCGAGCG CACCGCGGAC
GAGTACACCC TCATGTGGCT GATGCGGGAC AGGGTGGGGG AGGTCTTCGA GGGCACCGTG
GTGAGCACCA CCTCCTTCGG TCTCTTCGTG GAGATGGAGA CCGGGGCCAC CGGTCTCGTC
CACGCCAGCA AGCTGCCCGG CTGGTGGGAG CTCGAGCCGA GCGGCGTGGT GCTCTCCAAC
GACGAGATCG GGGCCTCCTA CAGGGTGGGG GACCGCGTTC TGGTAGAATT GCTGGACATC
ACGCCGCTGC TTCAGAGGGC CGAGCTCAGG GTGGTGAAGA GGCTGTGA
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| Protein sequence | MPAVLVRRGK YSVADPLFVD ERRPILVARK LRRGAEAGDL VLVRARERKG SLRGEVVRVI
GPSSDPRNVY EALFASIGVS RSFPRGVEEE AEAVAGRSFG ERRDLRRLPT VTIDGEDAKD
FDDAISILRE DGGYRLWVHI ADVTHYVDPG GALDRQALYR GNSVYLPGTV APMLPARLSA
DVCSLRPHAD RAAVTVEISV SGEGEVRGWK VYRSLICSDA RLTYEAVDAF LEGRGEIEQP
ELVRTAFELS RRLKTNAAVR GKLELESREP EYEVDEEGVP VAASMRPSTP ARELIEELMI
LANVCVAREL RRRRGAVFRV HERPSPEDLE LLAERLAAVG VRVEPTPENL GTIARMLKSR
ALGYLVLRSI PRALYSPGNV GHYGLALEDY THFTSPIRRY ADVLVHRALL GDELPENLPE
VAEHISEREW QSMICERTAD EYTLMWLMRD RVGEVFEGTV VSTTSFGLFV EMETGATGLV
HASKLPGWWE LEPSGVVLSN DEIGASYRVG DRVLVELLDI TPLLQRAELR VVKRL
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