| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1544 |
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| Symbol | |
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| ID | 4116874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 1563169 |
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| End bp | 1565457 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 638036340 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_644318 |
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| Protein GI | 108804381 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCAG GCAGGTTCTT GTGGGCGGCG TATGCGGGGC TGGGGGCGCT CGCCACCGCC
GGTTACTTCT TGCTCCCGGC GGGGCTCGCC GCGGCGGTGT ACATCCTGAC CGGGGCCTCC
TCCGCCGCGG CGGTCGCCCT CGGGGCGCTC CTCCACCGCC CGTCCCGGCG CCTGCCCTGG
TTCGTGCTCT CGCTGGGGCC GCTGCTCATG AGCCTCGCCG ACTGCCTCTG GAGCTACTAC
TGGTCCAGGG GGAGCGTGCC CTACCCCTCC TACGCGGACG CGCTCTACCT GCTCGGCTAC
GTCTTCCTGG GCGCCGGGCT TCTCCTGCTC CAGCACCGCA CCGTGAGCAA CGGGCTGGAC
GCCCTGGTGG ACCCCCTGAT GGTCGCGTCC GGGGGCGCCC TGCTCTACTG GGGGCTCATC
ATCGGCCCTT ACGTGCACGA CCCCTCGCTC TCCCTCCCGG CGAAGGCCGT CTCGGTGGCC
TACCCGCTGC TCGACGTGCT CCTGCTGGCG GCCCTCGCGC GCTACCTGCT GGGGTTCGGC
GGGAGGGTCC CTGCGCTCTA CCTGCTGGGG CTCTCCTTCG CCGTCCTGCT CCTCGCCGAC
TCGGTGTACG GGCTGCAGGT GCTGCAGGGC TCCTACCGGG ACGGGAGCTG GGTAGATGCC
GGGTGGCTGG CCTGCTACGT GCTCCTCGGG GCGGCGGCGC TGCACCCCTC GATGCGGGGG
CTCTCCGTGC CGCAGCCCGG TTCGGCGGAG CCGGCCCTGC TCACGAACCG GCGCATCGCC
CTCCTCACCG GGGCGGCCCT CACGGCGCCG GGGCTGCTCG CGGCGCAGGC CGCGCTGGGC
GTGCGGATCG ACGCCTACCC CATCGCGGCG GGGTGCGTCC TGATCTTCGC GCTCGCCGTC
ATCCGGATAA GGGGCATCGT GGTGGCGCTC CTGCGAACCC TCTCGGAGCG CGAGCGGCTG
CAGGAGAGGC TGGAGCAGCA GGCGCTGCAC GACCCCCTCA CCGGGCTCGC CAACCGGGCG
CTGTTCTCCG ACCGGCTGGC CCACGCCGCC TCCCGGGCGA ACCCGCTCGA CTGCGGGCGC
CTGGCCGTGC TCATGCTCGA CCTGGACGGG TTCAAGTCCG TGAACGATTC CCTCGGCCAC
GAGGTGGGGG ACGCGCTGCT CGTCTCGGTC GCCGGGCGAA TCAGGGCCTG CGTGCGGCCC
TCCGACACGG TGGCCCGGCT GGGCGGGGAC GAGTTCGCCG TGCTGATCGA GGAGATCTCG
GACGTCGGCG CGGCCGTGAG GGTGGCCGAA AGGATCCTGG ACCGCCTCGG GGAGCCCTAC
TCCGTGGGCG GCGTGGGCAG GGTGGCGGCC GCGAGCGTGG GCGTGGCCTT CGGTCCCGCG
AGGGAGGCGA AGAGCCTCCT CCGGGACGCT GACGCGGCCA TGTACGTGGC GAAGGAGAGG
GGGAAGGGGC GCTACGAGGT CTTCGAGCCC CGGATGCGGA ATGCCCGCGC GGAGAAGCTG
CGGCTGGAGG CCGAGCTGCG GGCGGCCCTG GAGCGCGGGG AGTTCGCCGT CCACTACCAG
CCCATAGTCT CGTTCGCCAC CGGGGAGGTG GTGGAGGTGG AGGCGCTGGT GCGCTGGGAG
CGACCCGGGC GGGGGACCGT CGGGCCGGCG GAGTTTCTCT CCGTGGCGGA GGAGAGCGGC
CTCATCGTGC CGATCGGCCG GTGGGTGCTG CGCGAGGCGT GCCGGCAGGT GCGGGAGTGG
CAGAAGGGCG GCTCCCGGGA GCTCGCGCTC GCGGTGAACC TCTCCGCCAG CCAGCTGCAC
CACCCCCGGC TCGTCCGCGA GGTGGAGGAG GCCCTCGGCC TGAGCGGGCT GGAGGCGCGC
CACCTGAAGC TGGAGATCAC CGAGCAGGCG GCGGTGGAGG ACGCGCGGGA GGCGGCGAGG
AGGCTGGAGG AGCTCTCGGC GCTGGGCGTG CGGATCGCGC TCGACGACTT CGGGAGCGGC
TACTCGGCGC TCAGCTACCT CAGGACGTTC CCGGTCGACA CGCTGAAGAT AGACCGGTCG
TTTATCGAGG GGATCGGACG CGACCTCCAG GCGACCTCCA TCGTGGGCGC GGTCATCGCC
CTGGCCAAGA GCCTGAACAT GTGCGTGACC GCCGAGGGCA CGGAGACGGA GGAGCAGCTC
GCCCACCTCC GCTCTCTGGG CTGCGACCTG GCTCAGGGCT ACTACTTCTC CCGCCCGGCC
TCTCCGGAGG AGGTGGAGAG AAAGCTCGGG CTCGCCCGTA GAAGGAGGGA CGAGCCCGCA
AAACGCTGA
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| Protein sequence | MAAGRFLWAA YAGLGALATA GYFLLPAGLA AAVYILTGAS SAAAVALGAL LHRPSRRLPW
FVLSLGPLLM SLADCLWSYY WSRGSVPYPS YADALYLLGY VFLGAGLLLL QHRTVSNGLD
ALVDPLMVAS GGALLYWGLI IGPYVHDPSL SLPAKAVSVA YPLLDVLLLA ALARYLLGFG
GRVPALYLLG LSFAVLLLAD SVYGLQVLQG SYRDGSWVDA GWLACYVLLG AAALHPSMRG
LSVPQPGSAE PALLTNRRIA LLTGAALTAP GLLAAQAALG VRIDAYPIAA GCVLIFALAV
IRIRGIVVAL LRTLSERERL QERLEQQALH DPLTGLANRA LFSDRLAHAA SRANPLDCGR
LAVLMLDLDG FKSVNDSLGH EVGDALLVSV AGRIRACVRP SDTVARLGGD EFAVLIEEIS
DVGAAVRVAE RILDRLGEPY SVGGVGRVAA ASVGVAFGPA REAKSLLRDA DAAMYVAKER
GKGRYEVFEP RMRNARAEKL RLEAELRAAL ERGEFAVHYQ PIVSFATGEV VEVEALVRWE
RPGRGTVGPA EFLSVAEESG LIVPIGRWVL REACRQVREW QKGGSRELAL AVNLSASQLH
HPRLVREVEE ALGLSGLEAR HLKLEITEQA AVEDAREAAR RLEELSALGV RIALDDFGSG
YSALSYLRTF PVDTLKIDRS FIEGIGRDLQ ATSIVGAVIA LAKSLNMCVT AEGTETEEQL
AHLRSLGCDL AQGYYFSRPA SPEEVERKLG LARRRRDEPA KR
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