| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1334 |
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| Symbol | |
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| ID | 4116021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 1360043 |
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| End bp | 1361506 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638036128 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_644110 |
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| Protein GI | 108804173 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.763605 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAACA CGCGCAACAA CCTCATCATC CTCGGGCTGG TGCTGGTCCT CATCGCCGTC
TCGGCCTACC TCATCTTCAT CCGTCAGCCC GTTGCGCGGG CCACCCAGCT CGGGCTCGAC
CTCAAGGGCG GGGTCCGGGT GCAGCTTGAG GGCTACCAGC ACGGCGGCAG CGAGGTGACC
CGGGAGGAGA TGCAGCGGGC GGTGGAGATC ATCCGCCAGC GGGTGGACAG CCTGGGGGTG
ACCGAGCCGG AGATCCGGCT GCAGGGCCAG AACCAGGTGC TCGTGGACCT GCCGGGCATC
TCCGACCGCG ACCGGGCCGT GGAGGTCATC GGGCGCACGG CGCAGCTCGG CTTCTACGAG
GTTCTGGCCT TTGAGGAGCG GGCGGGGGTG CCCGAGGGGC GGGTGGACGA GGCGAAGCGG
GACATCCGGG AGAGCCTGCG GCAGGACGAC GCCTACAGGG AGGGGAAGAC CAAGATCCTC
TTCGAGGAGA GCCCCAACCC GGGCGGGGAG GGGCTCTACG TGGCCGGGTA CGTGGTCCGC
GAGCGGCCGG ACATGACCGG AGACGCGGTG GAGAGCGCCA ACCTGGGGCG CGACCCGGCG
GGGAGGCTGC AGGTCGAGAT AAACCTCACC GGCAGGGGGG GCGACCAGTT CTTCGACCTC
ACCCGCCAGA TAGTGGACAA CGCCCTGGAG CGGGGCGAGC CCGGGACCGG ACGGCTCGCC
ATCGTGCTTG ACCAGGACGT CGTGAGCGCC CCGGTGGTGG ACGAGCCCAT ACCCGGCGGG
CAGGTCGTGA TCCAGAACAC CAGCTCGCCC ACCGGGCTCC CCGAGCAGGA GGCGCGGGAG
CTCGAGATCG TGCTGCAGAC CGGCGCGCTC CCGGTGAACA TGCGGGTGCT CTCGGTGGAG
ACCATCGGCC CCACCCTGGG GACCGAGTCC CTGCGGAGCG GGCTCATCGC CGCGCTCGTC
GGCTTCGGGC TCGTGCTGCT CTTCCTCGTC GCCATCTACC GGGCGCTCGG GGTGGTCGCC
GGGCTCGCGC TGCTCATCTA CGCCTTTCTG CTGTGGGGGC TGATCGTGGC CATCCCCGTG
ACGGTGACCC TCCCCGGTAT TGCGGGCATC GTGCTCTCCG TGGGGGTCGC GGCCGACGCG
AACATCGTGA TCTTCGAGCG GATAAAGGAA GAGGTGCGGC GGGGCAAGAC GCCGCGCACG
GCGATCCAGG TCGGCTACCA GAAGGGCTTC CGGGCGATCC TGGACGGCAA CATCACCACG
CTCATCACGG CTTTCATCCT GTTCGCGATG GCCAGCGCGC AGGTGCGGGG CTTTGCGGTG
CTGCTGGCGA TCGGCGTGGT GCTCTCCATG TTCACGGCGG TGGTGGTCAC CCGGGCGCTG
CTGGGGCTGC TCTCCAGCCG CGGCATCCAC CTCTCGCCGG CGATGATGGG GGTTTCGAAG
AAGAGCCTCG CGGGGGCGCG GTAG
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| Protein sequence | MNNTRNNLII LGLVLVLIAV SAYLIFIRQP VARATQLGLD LKGGVRVQLE GYQHGGSEVT
REEMQRAVEI IRQRVDSLGV TEPEIRLQGQ NQVLVDLPGI SDRDRAVEVI GRTAQLGFYE
VLAFEERAGV PEGRVDEAKR DIRESLRQDD AYREGKTKIL FEESPNPGGE GLYVAGYVVR
ERPDMTGDAV ESANLGRDPA GRLQVEINLT GRGGDQFFDL TRQIVDNALE RGEPGTGRLA
IVLDQDVVSA PVVDEPIPGG QVVIQNTSSP TGLPEQEARE LEIVLQTGAL PVNMRVLSVE
TIGPTLGTES LRSGLIAALV GFGLVLLFLV AIYRALGVVA GLALLIYAFL LWGLIVAIPV
TVTLPGIAGI VLSVGVAADA NIVIFERIKE EVRRGKTPRT AIQVGYQKGF RAILDGNITT
LITAFILFAM ASAQVRGFAV LLAIGVVLSM FTAVVVTRAL LGLLSSRGIH LSPAMMGVSK
KSLAGAR
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