| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0706 |
|---|
| Symbol | |
|---|
| ID | 4116591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 740329 |
|---|
| End bp | 741057 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638035491 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_643488 |
|---|
| Protein GI | 108803551 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00246779 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGAGG ACAGGTTGGA CTTCGACCTT GGGGGAAGGG TGGCCCTGGT GACCGGGGCG
GCGAGCGGCC TGGGGGCGGC GATCGCCAGG ACGCTCGCCG CCCACGGCGC CCGGGTGGCC
TGCGCGGATA TAGACGAGAA CGGCGCGCGG ATCACCGCGG AGGAGACGGG CGGGCGCCCG
CTCCTCATGG ACGTGGCGGA CCCCGCCTCG GTGGAGGCGG GGGTGCGCTC CCTCGCGGAG
GGGGAGGGGC GCATAGACAT CCTCGTCAAC AACGCGGGCG TGGACTACAT ACGCTCCGCG
GTGGAGATGA GCCTCGAGGA GTGGGACAGG GTCCAGCACA CCAACCTGCG GGGCCCCTGG
CTGCTCTCGC GGGCCGTCTT CCCCCACATG GCCCGGCGGG GCTCCGGGCA GATCCTCAAC
GTCTCCTCCA CCGCCTCCAA AAAGGGCTGG GCCAACGCCA CCGCCTACTG CTCCTCCAAG
CACGGCGTCA TGGGCCTCAC CCAGGCACTG CAGGCCGAGG GCAAGGAGCA CGGCATAAAG
GTCATGGCCC TCGTGGCGGG GGGGATGCAA ACCAACTTCT TCAGGACGCT GGACCCGCCG
CCGGACCCGG CCACCCTCCA GCCGCCGGAG AACGTGGCGC GGGCGGCCCT CTTCATGCTC
TGCCAGCCCG AGGAGAGCAT CGTGCACGAG CTGATCATCA CCCCCGTCAC GGAGACCTCC
TACCCGTAG
|
|---|
| Protein sequence | MPEDRLDFDL GGRVALVTGA ASGLGAAIAR TLAAHGARVA CADIDENGAR ITAEETGGRP
LLMDVADPAS VEAGVRSLAE GEGRIDILVN NAGVDYIRSA VEMSLEEWDR VQHTNLRGPW
LLSRAVFPHM ARRGSGQILN VSSTASKKGW ANATAYCSSK HGVMGLTQAL QAEGKEHGIK
VMALVAGGMQ TNFFRTLDPP PDPATLQPPE NVARAALFML CQPEESIVHE LIITPVTETS
YP
|
|---|
| |