| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_0492 |
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| Symbol | |
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| ID | 4114677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | + |
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| Start bp | 527042 |
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| End bp | 529306 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 638035280 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_643278 |
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| Protein GI | 108803341 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTCGG CCTGCGAAGA GAACGGCGCC ACCGGCCAGA AGGGTCCCGA GCCGGACGAC
CTGCGCCTGC TGCAGTTTCT GCGCTGGGTG GTGCCGCTGG TCTTCGGCTT CGCCGCGCTC
GCCGGGGCGG CCGCGGCCCT CTTCTCCGAC CCGGGGCTGC TCGCCGCCGG CGTCATCCTC
CTGACCTACG GCGGGCTGCT CCTCTTCGCC CGGCGCCGGG TCGGCGCCGG GGAGCGGGTG
GAGGCGGTGT GGACCATCTG CGTCGGGCTG CTGCTCGCGG CCCTGCTCAT GTCCGCCGTG
CAGCCCGGCT GGCTGGCGGT GCTCGCCGTC ACCCCGCTCA TCTCCGTGGC CGTCGCGCTC
CCCTACGTGC GGGGCGGGGA CCTGTTGCGC CTGATCTTCC TCGCCTGGCT CACCGTGGTG
GTCATGGCGA TCCTGAGCCG GGCGCTGCCG CCGCTCTCCC GGCCGCCCGC GTGGTTCGTG
GATGCCTTCA CCGCGGGCGC CCTGGCCGCC GCCACCGCCG TGGTGCTGCT CCTGCTCTGG
CAGTTCAGCA CCCGGCTCAA CGAGACCCTC GCCCGGACGC GGGCGGCGGA GGAGCGCTAC
GCCCTGGCCG AGCGCGGGGT CAACGACGGC CTGTGGGACT GGGACCTCCG GCGGGACCGG
GTCTACTACT CCTCCCGGTG GAAGGAGATG CTCGGCTGGC GGGAGGACGA GGTCGGCGAG
GAGCCCGACG AGTGGTTCCG GCGGGTGCAC CCGCAGGACA GAAAGCGGCT GCTCGAGGAG
GTGAGGGAGC ACCTGCGGGG CCGCCGGGAG CACCTGAACG TCGAGTACCG CATCCGCCAC
CGGGACGGGT CGTACCGCTG GATGCTGACG CGGGGGCTGG CGGTGCGCGA CGGGGAGGGC
AACCCGGTGC GCATGGCCGG CTCCCAGACG GACATCACCC GCCGCAAGCA GGCCGAGGAG
AAGCTGCTCC ACGAGGCCTC GCACGACGCC CTCACCGGCC TGCCCAACCG CGCCTTCTTC
ATGGAGCGCC TCGGGGAGGC CCTCCGGCGC CCGGGGGACG GGGACCGGGT CGCCGTCCTG
TTCATCGACC TGGACCGCTT CAAGATGATC AACGACTCGC TGGGGCACGC GATGGGGGAC
AGGCTGCTGG TGGCCGCGGC CGAGCGCCTC AAGGGGTGCC TGCGGCCGCA GGACACCCTG
GCGCGGCTCG GGGGCGACGA GTTCACGGTG CTCCTCGAGG GCGTCTCCTC CGAGGAGGCC
GCCTCGGTCG CCGACCGGCT GCTCGAGCGT CTGCGGGAGC CCTTCCGCCT GGACGGCTAC
GAGCTCTTCA CGGCGGCGAG CGTCGGGGTC GTGCTCGGCG GGCGCGAGCG TGCCGGGCCG
GAGGAGCTCC TGCGCGACGC GGACATCGCG ATGTACCGGG CCAAGGCGCT CGGAGGGGGG
AGAAAGGGGA TCTTCGAGGC CGGGATGCAC ACCCGGGCGA TGGAGCTCTT CCGGCTGGAG
AACGAGCTGC GGCGCGCCAT CGAGCGGGAG GAGTTCACCG CCCACTACCA GCCGATCGTC
TCGCTCAAGA CCGGCCTGAT CTCCGGCTTC GAGGCCCTGG TCCGCTGGCG GCACCCGGAG
CGGGGCCTGA TCCGCCCGGA CGAGTTCGTC CCGGTCGCCG AGGAGACGGG CCTGATCGTC
CCGCTGGAGC TCTCGGTGGT GCGGGAGGCC TGCGCCAGCC TGGTCTCCTG GCAGAGGGAG
TTCCCCCAGC ACCGGCCGCT GACGATGAGC GTGAACCTCT CCCGCAACCA GCTCGCCCGG
CCGGAGCTGC CGGAGCAGGT GGAGAGGATC CTGCTGGAGA CCGGCCTGGA CGCCCGCTCG
CTGCGGCTGG AGGTGACCGA GAGCGCGATC ATGGAGAACG TGGGGTCTGC GGCCGCCACG
CTCTCGCGCC TGCGCGACAT GAACATCCGG GTGCACATCG ACGACTTCGG GATGGGCTAC
TCCTCCCTGA GCGTGCTCCA CCAGCTCCCC ATAGACGCCC TGAAGGTGGA CCGCTCGTTC
GTGGGCCGGA TGGATGGCGC GAACGACGAC GTGGAGATCG TCCAGACGAT CATTACCCTC
GCCCACAACC TGGGCCTGGA CGTGGTGGCC GAGGGGGTGG AGAGGGAGGA GCACCTGGAC
CGCCTCCGGA GGCTGGGCTG CGACTACGCC CAGGGCTTTC TGTTCTCGGA GCCCCTGGAC
GCCGCGGGCG CCCGCCGGCT CCTCTCCGCG TACCGGCGCT GGTAG
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| Protein sequence | MRSACEENGA TGQKGPEPDD LRLLQFLRWV VPLVFGFAAL AGAAAALFSD PGLLAAGVIL
LTYGGLLLFA RRRVGAGERV EAVWTICVGL LLAALLMSAV QPGWLAVLAV TPLISVAVAL
PYVRGGDLLR LIFLAWLTVV VMAILSRALP PLSRPPAWFV DAFTAGALAA ATAVVLLLLW
QFSTRLNETL ARTRAAEERY ALAERGVNDG LWDWDLRRDR VYYSSRWKEM LGWREDEVGE
EPDEWFRRVH PQDRKRLLEE VREHLRGRRE HLNVEYRIRH RDGSYRWMLT RGLAVRDGEG
NPVRMAGSQT DITRRKQAEE KLLHEASHDA LTGLPNRAFF MERLGEALRR PGDGDRVAVL
FIDLDRFKMI NDSLGHAMGD RLLVAAAERL KGCLRPQDTL ARLGGDEFTV LLEGVSSEEA
ASVADRLLER LREPFRLDGY ELFTAASVGV VLGGRERAGP EELLRDADIA MYRAKALGGG
RKGIFEAGMH TRAMELFRLE NELRRAIERE EFTAHYQPIV SLKTGLISGF EALVRWRHPE
RGLIRPDEFV PVAEETGLIV PLELSVVREA CASLVSWQRE FPQHRPLTMS VNLSRNQLAR
PELPEQVERI LLETGLDARS LRLEVTESAI MENVGSAAAT LSRLRDMNIR VHIDDFGMGY
SSLSVLHQLP IDALKVDRSF VGRMDGANDD VEIVQTIITL AHNLGLDVVA EGVEREEHLD
RLRRLGCDYA QGFLFSEPLD AAGARRLLSA YRRW
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