Gene Rxyl_0398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_0398 
Symbol 
ID4117496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp426569 
End bp427666 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content67% 
IMG OID638035187 
Productperiplasmic sugar binding protein-like protein 
Protein accessionYP_643185 
Protein GI108803248 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00152665 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGGGT CTTCTTTTGC GAGGTGGGGG CACAGGGGGG CGGCGCTCCT GGCCGCCGTT 
GCGGCGGTGC TGCTCGTCGC GGCCTGCGGA GGGGGAGGCT CGCAGCAGGG TTCGGAGGGC 
GGCGCCCCGT ACACCATCGG GGTCTCCAAC GGCTTCATCA GCAGCGAGTG GAGGACCCAG 
ATGATCCAGG ACCTCGAGCG GGTCAACAAG GAGTACATGG AGGAGGGCCT CACCGAGGAG 
CTGGTCATCG AGAGCGCCGA CGTGGACGTG CAGGGCCAGA TCCAGCAGAT GAGGAACCTC 
ATCAACCAGG GGGTCGACGC GATCATCGTC AACCCCAACT CGGTCACCGG GCTCAACCAG 
GTCATCAAGG AGGCCTCCGA CGCCGGGATC GTCGTGATCT CCGTCGACCA GGAGATACCG 
GCAGAGGGGG CCATCAACGT GGTCATAGAC CAGGCCGAGT GGGCCCGCCG GAGCGCCGAG 
TGGCTCGTGG AGCAGCTCGG CGGCGAGGGC GACGTGGTGG TCATAAACGG CATCGCCGGC 
CACCCGGCCA ACGAGGCCCG CTACGACGCC GTAAAGGAGG TCTTCTCCCG GAACCCCGGC 
ATAGAGGTCA TAGCCGAGGC CAACGCCAAC TGGGACCAGG CCACCGGCCA GCAGAAGATG 
TCCAACATCC TCGCCTCCGA GACCGGCATC GACGGCGTCT GGACCCAGGA CGGCATGGCC 
CGCGGGGTGC TGCAGGCCAT CGTCGCCTCC GACCCGGAGC GGTTCCCGGT GGTCGTGGGC 
GAGGCCCGGC TCGGGTACAT GCGGCTGTGG CACGAGCTGC GCCAGCAGGA CGAGGACTTC 
TCCTCCTACG GCGTGATCAA CCCGCCCGGC GTCGGGGCGA GCGGGCTGCG GGTCGCCGTG 
GAGATGCTGC GGGGCAAGGA GCTCAAGGAG GGCGTGCTCT CGGGCGAGGC CAACAACACC 
ATCTACGTCC CCATCCCCGG GGTGGTCAAC GACCAGAACT TCGACGAGTG GTACGCCAGG 
GTCAAGGACA AAGAGGGCGA GTACGTCCTC GACGGCATCA TCAGCCGCGA GAAGGCCCAG 
AGCTACTTCA AGCAGTAG
 
Protein sequence
MTGSSFARWG HRGAALLAAV AAVLLVAACG GGGSQQGSEG GAPYTIGVSN GFISSEWRTQ 
MIQDLERVNK EYMEEGLTEE LVIESADVDV QGQIQQMRNL INQGVDAIIV NPNSVTGLNQ 
VIKEASDAGI VVISVDQEIP AEGAINVVID QAEWARRSAE WLVEQLGGEG DVVVINGIAG 
HPANEARYDA VKEVFSRNPG IEVIAEANAN WDQATGQQKM SNILASETGI DGVWTQDGMA 
RGVLQAIVAS DPERFPVVVG EARLGYMRLW HELRQQDEDF SSYGVINPPG VGASGLRVAV 
EMLRGKELKE GVLSGEANNT IYVPIPGVVN DQNFDEWYAR VKDKEGEYVL DGIISREKAQ 
SYFKQ