Gene Rxyl_0072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_0072 
Symbol 
ID4117916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp75249 
End bp76313 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content74% 
IMG OID638034866 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_642865 
Protein GI108802928 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01900] succinyl-diaminopimelate desuccinylase 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGGGAGC GGCTCGCGGA GAACCTCCTC TGGTTTCTGG AGCGCCCCAG CGTGACCGGC 
GCCGAGCAGC GCCTGTGCGA CGACCTCGAG GCCCGCGTGG GCCGGCTGCC CGGCTGGAAG 
GCGCAGCGCA CCGGCAACAA CCTCGCCGTC CGCCGGGCCG CCCCGGACCC CTCGCGCCCC 
CTCATCCTGT TCGCCGGCCA CCTGGACACC GTGCCGGAGC CGGAGGGCGG CATCCCCGTG 
CGGGTGGAGG GGGAGCGCTT CTACGGCCGG GGCGCCTCGG ACATGAAGGC CGGCGACGCG 
GTGATGCTCG CCCTCATCGA GGAGCTCGAC TGGGAGCGCT CCTGGGCCGA GCCGGCCTTC 
GTCTTCTACG AGCGGGAGGA GGGGCCTCAC GAGGAGAACG GCCTGGAGGC GGTCTTCGAG 
GAGATGCCGT GGGTGCTTAA GGCCGGGCTC GCGCTCGTGC TGGAGCCGAC CGCCGGGGCG 
CTGGAGGCGG GTTGCGCGGG CACGGCGCAG GTGGAGGTGA CCTTCCGGGG GAGGGCCGCC 
CACGCAGCCC GCCCCTGGCA GGGGGAGAAC GCCATCTCCA AGGCCGGGCG CTTTCTGGCC 
GCGCTGCACG CGCGGGAGCC GGAGAAGGTC GTGGTGGAGG GGCTCGACTT CTACGACGTC 
CTCACCCCCA CCGTGGCCCG CGGGGGGAGC GCCAAGAACG TCGTGCCCGC CTCCTTCTGG 
GTCAACGTGA ACCACCGCTT TGCGCCCGGG CGCGGCATCG AGCACGTCCG GAGCACCTTC 
GAGGCGCTCC TCGGGGAGGA GGCGTCCTTC GAGATAGCGG ACTTCGCGCC GAGCGGGCCG 
GTGGATCTGA GCAACCCCCT GCTCCGGCGC TTTCTGGCCA CCGGCATCGA GGTCAGGCCC 
AAGCAGGCGT GGACCGACGT GGCCCGCCTC GCCGAACGCG GGGTGGCCGC GGCGAACTTC 
GGGCCCGGGC TGCCCGCACA GGCCCACCAG GACGACGAGC ACGCCGAGCT CCCGCTGCTC 
GAGGAGTGCT ACCGGCGCCT GGAGGGCTTC CTGCGCTCCG CCTAG
 
Protein sequence
MRERLAENLL WFLERPSVTG AEQRLCDDLE ARVGRLPGWK AQRTGNNLAV RRAAPDPSRP 
LILFAGHLDT VPEPEGGIPV RVEGERFYGR GASDMKAGDA VMLALIEELD WERSWAEPAF 
VFYEREEGPH EENGLEAVFE EMPWVLKAGL ALVLEPTAGA LEAGCAGTAQ VEVTFRGRAA 
HAARPWQGEN AISKAGRFLA ALHAREPEKV VVEGLDFYDV LTPTVARGGS AKNVVPASFW 
VNVNHRFAPG RGIEHVRSTF EALLGEEASF EIADFAPSGP VDLSNPLLRR FLATGIEVRP 
KQAWTDVARL AERGVAAANF GPGLPAQAHQ DDEHAELPLL EECYRRLEGF LRSA