| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmcs_3270 |
|---|
| Symbol | |
|---|
| ID | 4112102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. MCS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008146 |
|---|
| Strand | + |
|---|
| Start bp | 3466784 |
|---|
| End bp | 3468316 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638032402 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_640433 |
|---|
| Protein GI | 108800236 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03459] carotene biosynthesis associated membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCACAC CCACTCCGAC CGAGACGCCG AAACCCGGCT CGGCGCAACA TGTCTCCCGC
CTGATCGCAT TCGCCTCGTC GCCGTCGGGC AGACCCGCGC TGCTCGGTTT CCTGGGCGCG
ACGCTGATCA CGGCCGGCGG GCTCGGCGCA GGCAGCACCC GGGTGCACGA CCCCCTGCTC
GAATCGCTGC ACCTGTCGTG GCTGCGCTTC GGCCACGGCC TGGTGCTGTC CTCGGTGCTG
CTGTGGGGCG GGGTCGCGAT CATGTTGGCG GCCTGGTTGT GGCTGGGCCG CCGGGTCGTC
GGTGACGATC CGGGGCGCAC CGCCGACGAA TACACGATGG TCGCCACCAC CGGTTTCTGG
CTCGCGCCGT TGCTGCTCAG CGTCCCCGTG TTCAGCCGCG ACACCTACTC GTACCTGGCG
CAGGGCGCGC TGCTGCGCGA CGGTTTCGAC CCCTACGTAG TCGGCCCGAT CGCCAACCCG
AACCCGCTGC TCGACGACGT CAGCCCGATC TGGACCACGA CCACGGCACC GTACGGTCCG
GCCTTCATCA TGGTCGCGAA GTTCGTCACC ATGATCGTCG GCGAGCACGT GGTCGAGGGC
ACGATGCTGC TGAGACTGTG CATGCTGCCC GGGCTGATCC TGCTGATCTG GGCGGCGCCG
CGGGTGGCCC GCCACATCGG CGCCAGCGGC GCTGCGGCGC TGTGGATCTG CGTGCTCAAC
CCGCTCGTCA TCATCCACCT CATGGGTGGG GTCCACAACG AGATGCTGAT GGTCGGGCTG
ATGATGGCCG GGCTGGCCCT GACCCTGAAC AACCGCCCGG CGGTGGGTGT CGCGGTGATC
GTCGTCGCCG TCGCGGTGAA GGCGACCGCC GGTCTGGCGC TGCCGTTCAC GGTGTGGATC
TGGATGCGCC AGTTGCGCGA TCGCCGCGGC TACGGTGCGC CGCGGGCGTT CGCGACCGCC
ACCGCGGCGG GGCTGGCGAT CTTCGTCGCC GTGTTCGCGG TGTTGTCCTG GGTCGCCGGG
GTGGGTCTGG GCTGGCTGAC CGCGCTGGCG GCCGGGAACG TCAAGATCAT CAACTGGTTG
ACGCTGCCGA CGGCGGCGGC GAACGTGATC AACGCGGTGG GCGGGCTGTT CCTGCCGGTG
AACTTCTACG CCGTCATCGA TGTGACCCGC ATAGTCGGCC TGGCGATCAT CGTGGTGGCG
CTTCCGCTGC TGTGGTGGCG GTTCCGGCAC GACGACCGCG AGGCGCTGAT CGGGATCGCC
TCCGTGATGC TCGTCGTCGT GCTGTTCGTA CCCGCCGCGC TGCCCTGGTA CTACACCTGG
CCGCTGGCGG TGGTCTCCGC GCTGGCCCAG TCGAGGCGGT CGATCGCGCT GATCGCCGGG
TTCTCCACCT GGATCATGGT CATCTTCAAA CCCGACGGCG CGCACGGTAT GTATTCGTGG
CTGCACGTCC TACTGGCCGC GGGATGCGCT GTGGTGGCGT GGTATTCGCT GGCGAAGGTT
CGTGAGCGGG CGCCGACCGC GGGCGGTCAG TAA
|
|---|
| Protein sequence | MVTPTPTETP KPGSAQHVSR LIAFASSPSG RPALLGFLGA TLITAGGLGA GSTRVHDPLL
ESLHLSWLRF GHGLVLSSVL LWGGVAIMLA AWLWLGRRVV GDDPGRTADE YTMVATTGFW
LAPLLLSVPV FSRDTYSYLA QGALLRDGFD PYVVGPIANP NPLLDDVSPI WTTTTAPYGP
AFIMVAKFVT MIVGEHVVEG TMLLRLCMLP GLILLIWAAP RVARHIGASG AAALWICVLN
PLVIIHLMGG VHNEMLMVGL MMAGLALTLN NRPAVGVAVI VVAVAVKATA GLALPFTVWI
WMRQLRDRRG YGAPRAFATA TAAGLAIFVA VFAVLSWVAG VGLGWLTALA AGNVKIINWL
TLPTAAANVI NAVGGLFLPV NFYAVIDVTR IVGLAIIVVA LPLLWWRFRH DDREALIGIA
SVMLVVVLFV PAALPWYYTW PLAVVSALAQ SRRSIALIAG FSTWIMVIFK PDGAHGMYSW
LHVLLAAGCA VVAWYSLAKV RERAPTAGGQ
|
|---|
| |