| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_5533 |
|---|
| Symbol | |
|---|
| ID | 4096548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008062 |
|---|
| Strand | + |
|---|
| Start bp | 50284 |
|---|
| End bp | 51516 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638018812 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_625378 |
|---|
| Protein GI | 107028283 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.748731 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGACA CCACGCGCCC CGCTCGCCTG AACTTCGCGC TCATGTTGCC GCTGCTGCTG
GCGGCCCAGC CGGTGGCGAC CGACAGTTAT CTGCCGGCCC TGCCTGAAAT CGCCGCGACA
CTGGGCTCCG CCAGCGTCAG TCTCACGGTT TTCGCATTGA TATTCGGTGT CGGACAATTG
CCGATGGGCG GTCTTTCCGA CCGAATCGGC CGCCGCCCCG TCTTGCTGAC CGGCCTTGCG
CTCTATGCGC TGAGTGCATT GGCGGCGGCG CTCGCATCGA GCGCCGCGAT GCTGGTGGCC
GCGCGTGCGA TGCAGGGCTT TGCGATGGCC GCGATCCTGG TATGCGCGCG TGCGACGGTA
CGCGACCGGT ACTCGGCGGG CGACGGCCCG TACGTGATGG CGCGCGGTTT TATGGGAATG
GGGATGATGG CGTTCCTTGC CCCGATTCTC GGCGCGTATG TCACGCAGCA CGCGGGCTGG
CGATGGGTAC TCGCGGGGAT GAGCCTGTAT GCGTTCGGCT TGCTCGTCAT GTGCTGGTAC
GGCTTCGAGG AAAGCGCCGC CAGAATCGCG CCGGGCCGGA ACTCGACCGG GGACGTGCGC
GAGATATTCG GCAATGTCCC GTTCAGGGTA TGGACGCTGC TGGCCGCGTC GACGTACACC
GGCATGTTCT GTTTTCTGCT GCTTTCTCCG ACGATTTACA TCCGGCAGCT CGGCATCTCG
CCCCAGCGAT ACGGCTGGAT TCCGGCGAGC GGGACGCTCG TCTATGTCCT CAGTACCGTT
GGCTGCCGGC ACTTGCTGCG ACGTCAAAGC ATGCTGCGAA CGGTGCGGCA AGGCGCGACG
CTGAGCCTGT CAGGCGCGGT GATCCAGGCA TTGGGGTGCG CGCTGCTTCC CGGCAGCATC
TGGCCGCTGC TCGTCGGGCA CGGCGTGTAT TGTCTCGGGC ACGGAATCCA TCAGCCATGC
GGGCAGGCAG GCGCGGTCAG CGGCCTGCCT CATCTTGCCG GCCGCGCGGT ATCGTGGTCC
GGCTTCATCA TGATGTTCTT CGCTTTCAGC GTGGGGCAGA CGGCGGCGGT TTTCACCGAT
CCGCGCTATC AGTCGGGCGC GTGGCCAATG GTGGTGCCGA TGCTTGGCGT CGGCGTTACG
CTGGTTACGA TCGCGTTTGT GTGGTTGCCG AGAATCGGTG GCGCGAATTT GGGCGCGGCA
GCGGTTCCGG CGCGGGCGGT AGATGGTCGG TGA
|
|---|
| Protein sequence | MPDTTRPARL NFALMLPLLL AAQPVATDSY LPALPEIAAT LGSASVSLTV FALIFGVGQL
PMGGLSDRIG RRPVLLTGLA LYALSALAAA LASSAAMLVA ARAMQGFAMA AILVCARATV
RDRYSAGDGP YVMARGFMGM GMMAFLAPIL GAYVTQHAGW RWVLAGMSLY AFGLLVMCWY
GFEESAARIA PGRNSTGDVR EIFGNVPFRV WTLLAASTYT GMFCFLLLSP TIYIRQLGIS
PQRYGWIPAS GTLVYVLSTV GCRHLLRRQS MLRTVRQGAT LSLSGAVIQA LGCALLPGSI
WPLLVGHGVY CLGHGIHQPC GQAGAVSGLP HLAGRAVSWS GFIMMFFAFS VGQTAAVFTD
PRYQSGAWPM VVPMLGVGVT LVTIAFVWLP RIGGANLGAA AVPARAVDGR
|
|---|
| |