Gene Bcen_5501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_5501 
Symbol 
ID4097047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008062 
Strand
Start bp21371 
End bp21910 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content72% 
IMG OID638018780 
Productpeptidase A24A, prepilin type IV 
Protein accessionYP_625346 
Protein GI107028251 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4960] Flp pilus assembly protein, protease CpaA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.324507 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTCCCG TTGCGCCGCC TTACCCGGTT CCGTTGTGCG TGACGCTGCT CGCGGTCGCC 
GCGGCCAGCA CGGACATCGC GACCCGTCGC ATTCCGAACC GTCTCGTCTT GCTCGGCCTG
GCCGGCGCGC TGGTCGCGCA GTGCCTGCTG CAGGGCGTGC CGGCGGGCGT GCTCGGATGG
CTCGCCGGCG CGGCGACCGG CTTCGGCCTG CTGCTGCCGT TCTACCTGTT GCGCGGCATG
GCGGCGGGTG ACGTGAAGCT GATGCTCGCG ATCGGCGCAT GGGTCGGCGC GGAAATGACG
TTTTACATCG TGCTGGCCAC GTTCCTGGCC GGCGGGATCG GCGCCATCGC CTACGCGCTG
CTGCGCGGGC GGATGCGCCA GATGTGGACG AACGTGCGCA CGCTGATCGT GCGGCGCTCG
CAGGCGGCGC GCGCCGAGGC CGACGACGGC CCCGTCGAGA TCGCATCGGT CGGCACGCTG
CCGTACGGCG TGGCGATCGC GGTCGGCACG CTGGGCACGC TGTTCGCGTC GTGCGCATAG
 
Protein sequence
MLPVAPPYPV PLCVTLLAVA AASTDIATRR IPNRLVLLGL AGALVAQCLL QGVPAGVLGW 
LAGAATGFGL LLPFYLLRGM AAGDVKLMLA IGAWVGAEMT FYIVLATFLA GGIGAIAYAL
LRGRMRQMWT NVRTLIVRRS QAARAEADDG PVEIASVGTL PYGVAIAVGT LGTLFASCA