Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_5498 |
Symbol | |
ID | 4097044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008062 |
Strand | - |
Start bp | 17019 |
End bp | 18947 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 638018777 |
Product | type II and III secretion system protein |
Protein accession | YP_625343 |
Protein GI | 107028248 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0729153 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATCA AACCGCAACG CACAGGTACC GGCCCGCTGC GCACACGCGT CGCACGGGGC ACGATGATGG CCGCGATCCT CTGTTCGGGA TGGCTGACCG TGTATGGCGC GCTCGCGCAG GAAGGCATCG AGTCGGCGGT GCTGACGAAG GGCGGCGCCA GCGCGCCGGC CGCGGTCGGC AAGGGGCCGA TGCAGATGAC GATCAGCATG GCGCCGGTGC CGGCCGCCGC GCCCGCCGCG TCGGCGGGGC CGCTGCGCGG GCCGAACTGC GTCGGCGCCG TGCGCGAATC GACCAGCGTC GCCGTGCCGC TCGGCAAGTC GCTGCTGGTG CCGATGCCGG AGCCGGTCCG CAATCGGACG ATCGGCAACC CGGCCGTCGC GCAGGCGACG ATGGTGTCGC CGCAGACGCT GTACATCCTC GGGCTTGCGG TCGGCACGAC CAACATGATC GTGCAGGGCA GGAGCGGCGC ATGCCGCGTG ATCGACGTCG CGGTCGGCGC GGACGCCGGC GGCCTGCAGG CGTCGCTGTT GCAACTGATG CCGAACGAGC GCGACATCCA TGTGTCGACC GCGGCCGGCA CGATCGTGCT GGCCGGCACC GTGTCGAGCT CGCAGGCCGC GCAGCAGGCC GTGCAGATCG CCCATGCGTA CGGCGACAGC GCGGGCGATG CGGCAGGCGG CAAGCAGGGC GGCGGCGTGC TCAACATGCT GAACGTCACG TCGCCGCAGC AGGTGATGCT CGAGGTGAAG GTGGCCGAGG TGTCGAAGAC GCTGATCAAC CAGATGGGCA GCGCGTTCAA CATCCAGGGC GGGTTCGGTT CGTGGAGCGG CGCGCTGGTC AGCAACCTGC TCGCGGGCGT CGCGAGCGGC GCCGTGTTCA ACAAGGCGAA CAACAAGCCG TTCAGCATCG CGGCCGACGC GCAGAACACC GACAACCTCG TCAAGATCCT CGCGGAGCCG AACCTCGTGA CGATCAGCGG TCAGGAAGCG ACGTTCCTCG CGGGCGGCAA GATCTTCATC CCGATCCCGC AGAGCGGCAG CAACGGCGTC TCGTCGATCA CGCTGCAGGA AGAGGAATTC GGCGTCGCGC TGAAGTTCAC GCCGACGGTG CTGGCCAACG GCCGGATCAG CCTGAAGGTC GCGCCGGAAG TGTCGGAACT GTCGCAGACG GGCGTCACGC TGAGCGCGTC CAACATCGGC GGCACGTCGA TCCTGCCGCT GATCACGACG CGGCGCGCGT CGACGACGGT GCAGATGAGC GACGGCGAAT CGTTCGCGAT CGGCGGGCTG ATCAAGGACA ACGCGAGCGG TGCGCTGAAG GCGATCCCCG GCGTCGGCGA AGTGCCGGTG CTCGGCGCGC TGTTCCGCAG CACGTCGTTC CAGCAGGATC GCACCGAGCT GATCTTCCTG ATCACGCCGC ACCTGGTGAA GCCGCTGCAG ACCGCGGACG TCGCGCTGCC GACCGACAGC TTCTCGAAGC CGAACGAAGT CGACGTCTTT GCGACCGGCA ACATGGAAGG CCGTGGCGGC GTGCGCAAGG CAGGCGCGCA GCCGATGCAA CCCGCGAACG GCGCAGCCGC TCCGCAGACG CCGGCCCAGG CGCCCGCACC TGCTCCGGCG CCGAAGTCGG AAGCACCGGT CGCGCCGGCC GCGCTGCCCG CACCGCGCAC GCCGCAAGAC GCCGACGTGC AGCCGCCCGT GCCGGCCGAG CCGCCGAAGG CGCCGGCGCC GGTCGCGGCC GCCGCCCCGC AGTCCGACGC GGCCACCGCG GCGCGTGTCG CGCGCATCGA AGCCGCCGCC GCGCGCCTCG CGGCCGCCGG CCCCGAACCG TCGGCCCAGC CGGCGGCGCG ACCGAAGCAC CGGAGCGCGG CGGCGCCGAA AGCGCAGATT GCGCGCGCCG GCGCGGAACC CCAGTCCACC GATCGTTGA
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Protein sequence | MKIKPQRTGT GPLRTRVARG TMMAAILCSG WLTVYGALAQ EGIESAVLTK GGASAPAAVG KGPMQMTISM APVPAAAPAA SAGPLRGPNC VGAVRESTSV AVPLGKSLLV PMPEPVRNRT IGNPAVAQAT MVSPQTLYIL GLAVGTTNMI VQGRSGACRV IDVAVGADAG GLQASLLQLM PNERDIHVST AAGTIVLAGT VSSSQAAQQA VQIAHAYGDS AGDAAGGKQG GGVLNMLNVT SPQQVMLEVK VAEVSKTLIN QMGSAFNIQG GFGSWSGALV SNLLAGVASG AVFNKANNKP FSIAADAQNT DNLVKILAEP NLVTISGQEA TFLAGGKIFI PIPQSGSNGV SSITLQEEEF GVALKFTPTV LANGRISLKV APEVSELSQT GVTLSASNIG GTSILPLITT RRASTTVQMS DGESFAIGGL IKDNASGALK AIPGVGEVPV LGALFRSTSF QQDRTELIFL ITPHLVKPLQ TADVALPTDS FSKPNEVDVF ATGNMEGRGG VRKAGAQPMQ PANGAAAPQT PAQAPAPAPA PKSEAPVAPA ALPAPRTPQD ADVQPPVPAE PPKAPAPVAA AAPQSDAATA ARVARIEAAA ARLAAAGPEP SAQPAARPKH RSAAAPKAQI ARAGAEPQST DR
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