| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_4679 |
|---|
| Symbol | |
|---|
| ID | 4094107 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | + |
|---|
| Start bp | 1943524 |
|---|
| End bp | 1944684 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638017966 |
|---|
| Product | porin |
|---|
| Protein accession | YP_624532 |
|---|
| Protein GI | 107027021 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.169136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTC CAGTTCGAAT CGTCATGATG TCAGGGGCGC TGCTGACGGC CGCGCACGCG
GCTCATGCAA CGGAAGTCAC GCTGTACGGC CTGTTCGATA CATCGCTGAC GGTTGTGTGG
AATGCCGATG CACAAGGCAG GAACCTCGTC GGCCTCGGCA ACGGCAACCT GCTCGGCAAC
CGCTTCGGCG TGAAAGGCGC GGAAGATCTC GGCGGCGGGC TGAAAGCGAT CTTCACGCTG
GAAAACGGCT TCAACCCGAA CACCGGCGCG CTCGGGCAAG GCAACCGGAT GTTCGGCCGG
CAGGCGTTCG TCGGGCTGGA AAGCGCTCGC TGGGGAACAC TCACGCTCGG CCGCCAGTAC
GACGCGCTCG CCGATGTCGC GTGGCCGATC ACCGGCGATT TCTACTTCGG CAGCGTGTAC
GCGACGCCCG GCGACGTCGA CAACTACGAC ACGTCGTCGC GCACCGACAA CGCGGTGAAG
TACACGTCAC CCGTGGTCGG CGGCTTCCAG TTCGTCGGCA TGTACGCGCT CGGCGGCGTG
GCCGGCAAGA GCGGCGCCGG CCAAACCTGG TCGGCCGGCC TGTCGTACAA CCATGGCCCG
TTCGACGCGG CGGGCGGCTA CTACTATGCG GCCAACCGCG CCTCGCTCGC GAACGGCGTC
CGGACCGGCT GGAACGGCAC GTCGGACGGC ACGTTCGACG GGTCGCTGGT CAACGGCGGC
TACCTCTCGG CGAAGTCGAT CGGCATCGCA CGCGGCGCGT TGCGCTACAC CTTCGCGCCG
TTCACGATCG GTATCGATTA CAGCAATGCG CAGTACAAGG CCGATGCGAT GACGGCCTTT
CGCAGCACGC AGAAATACGA CACCGCGCGC GGGTTCTTCA ACTATCAGGC AACCGCGAGC
CTGCTCGTCG GCGTCGGCTA CAGCTACACG AAGGCCCGCG GCGATACGAG CGCGACCTAC
CATCAGGTGT CCGCCGGCGC CGACTACGTG CTGTCCAAGC GCACCGATCT CTATGCGGTC
GGCGCGTGGC AACGCGCGAA CGGCGAACAG CGCACGCTCG ACGGCGGCAC GCAGGCGGCG
CAGGCGTCGA TCGGCTCGTA CGGCTACGGC GGCACGCGCA CGCAGGGCAT CCTCAATCTC
GGTTTGCGCC ACCGCTTCTG A
|
|---|
| Protein sequence | MKTPVRIVMM SGALLTAAHA AHATEVTLYG LFDTSLTVVW NADAQGRNLV GLGNGNLLGN
RFGVKGAEDL GGGLKAIFTL ENGFNPNTGA LGQGNRMFGR QAFVGLESAR WGTLTLGRQY
DALADVAWPI TGDFYFGSVY ATPGDVDNYD TSSRTDNAVK YTSPVVGGFQ FVGMYALGGV
AGKSGAGQTW SAGLSYNHGP FDAAGGYYYA ANRASLANGV RTGWNGTSDG TFDGSLVNGG
YLSAKSIGIA RGALRYTFAP FTIGIDYSNA QYKADAMTAF RSTQKYDTAR GFFNYQATAS
LLVGVGYSYT KARGDTSATY HQVSAGADYV LSKRTDLYAV GAWQRANGEQ RTLDGGTQAA
QASIGSYGYG GTRTQGILNL GLRHRF
|
|---|
| |