| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_4452 |
|---|
| Symbol | |
|---|
| ID | 4094667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | - |
|---|
| Start bp | 1689318 |
|---|
| End bp | 1691450 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638017739 |
|---|
| Product | TonB-dependent copper receptor |
|---|
| Protein accession | YP_624307 |
|---|
| Protein GI | 107026796 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.876031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAATT TCCTGTTGCG TGCGCCGCGG GCGCCACGCA ATGCCGGTGC GCGGCCTCTG
CCGCGCGTAC TGAAACTCAC CGTTCCTGCG CTGGCTGTCG GCGCGCTGGC CGCGAGCGCT
GCCGCAGCCG AAACCACGCC GGCGGCCGGT GCGCCGTCGG GCGATGCGGC GATGCTGTTG
CCGCCCGTCG AAGTCGTCGC GTCGCCGCTG TCGACGCCGC TCGTCGTCGT CACCGATCCG
AAGGCGCCGC GCCAGCCGCT GCCCGCCAGC GACGGCGCCG ATTACCTGAA GACGATTCCC
GGCTTCACGT CGATCCGTAG CGGCGGTACG AACGGCGACC CCGTGCTGCG CGGGATGTTC
GGTTCGCGGC TGAACATCCT GGCGAACGGA ATGCCGACGC TCGGCGCGTG CCCGAACCGG
ATGGATGCGC CGACCTCGTA CATCGCGCCG GAAAGCTATG ACAAGGTCAC CGTCGTGAAG
GGGCCGCAGA CCGTGCTGTA CGGTCCGGGT GCGTCGGCCG GCACCGTGCT GTTCGAGCGC
GTGACGCCGC GTTTCGAGCG CCCCGGCATG CGCTTCGACG GCAGTCTCGT CGGCGGGTCG
TTCGGCCGCA ACGACCAGAA CATCGACCTG ACCGCAGGCA CGCCGGACAT CTATGGCCGC
GTGACCGCGA ACCACGCGCA TTCGCAGGAC TACAAGGACG GCAACGGCAA CACCGTGCCG
TCGCAGTGGG ACAAATGGAA CGCCGATGCA GCGCTCGGCT GGACGCCCGA CGACCATACG
CGACTCGAGC TGACCGCCGG CACCGGCGAC GGCTATGCGC GCTACGCGGG CCGCGGGATG
GATGGCGCGC ATTTCCGCCG CGAGACGTTC GGCCTGTCGT TCGACAAGCG GCATCTCGGC
GACGTGCTCG ACCGGATCGA GGCGCGCGTG TACTACAACG AAGCCGATCA CGTGATGGAC
AACTACACGT TGCGGCAGCC CGACCCGACG AGCAGCATGC CGATGCGCAT GGCCGCGGAC
GTGCGGCGCC GCACGGTCGG CGCGCGTGCC GCCGCGACGT TCCGCTTCGG CGACGATTTC
AAGCTCGTCA CGGGCGTCGA TGCGCAATCG AACCGGCTCG ATTCGCGTGC GTCGATGGGG
CAGCAGAACT ACCGCGACCA GCCGTGGGAT GCCCAGGCGA CCATGTGGAG CGCGGGCGTG
TTCAGCGAGC TGACGTGGTA TGCGAGCGAC GTCTCGCGTG TGATCGGCGG CGCGCGCGTC
GACTATGCGA GCGCACGCGA CAAGCGCGCG ATGAAGAGCG GCATGATGAT GAGCAAGCCG
AACCCGACTT TCGACGACGA TCGGACGAAG GTGCTGCCGA GCGGCTTCGT GCGCTACGAG
CGCGATCTCG CGTCGCTACC CGTCACGTGG TACGCGGGGA TCGGCCACGC GGAGCGTTAT
CCGGACTACT GGGAACTGTT CTCCGCGACG CGCGGGCCGG CCGGTTCGAT CAACGCGTTC
TCGGCGGTGC AGCCGGAGAA GACCACGCAG CTCGATATCG GCGCGCAATA CAAGAGCGAC
CGGTTCGATG CATGGGTGTC GGCGTACGCG GGCTACGTCC AGGACTTCAT CCTGTTCAAC
TATGCGGCCG GCATGATGGG CCCGATCACG CAGGCAACCA ACGTCAACGC GCAGATCATG
GGCGGCGAAG CCGGCGTGTC GTGGCGGCCG GTCGCGCCGC TGCGCGTCGA GACGTCGCTC
GCGTATGCGT GGGGGCGCAA CGTGGCGAGC GGCGATCCGC TGCCGCAGAT GCCGCCGCTC
GAGGCGCGCA TCGGCCTCGA ATACACGCGC GGCGCGTGGT CGGCGGGCGG CCTGTGGCGC
ATCGTTGCGC CGCAGCATCG CTACGCGCTG AACGAGGGCA ACGTGGTCGG CAAGGACTTC
GGCCCGAGCG CCGGATTCGG CGTGCTGTCG CTGCATACGC AATACAACGT CAGCAAGACC
GTGCAAATCT CGGTCGGCGT CGACAACGTA CTGAACAAGG CCTACACCGA GCATCTGAAC
CTCGCCGGCA ACGCGGGTTT CGGCTATCCG GCGAACGCGC CGGTGATGGA GCCGGGGCGT
ACCGCGTGGG TGCGCGTGAG CGCGAAGCTG TAG
|
|---|
| Protein sequence | MTNFLLRAPR APRNAGARPL PRVLKLTVPA LAVGALAASA AAAETTPAAG APSGDAAMLL
PPVEVVASPL STPLVVVTDP KAPRQPLPAS DGADYLKTIP GFTSIRSGGT NGDPVLRGMF
GSRLNILANG MPTLGACPNR MDAPTSYIAP ESYDKVTVVK GPQTVLYGPG ASAGTVLFER
VTPRFERPGM RFDGSLVGGS FGRNDQNIDL TAGTPDIYGR VTANHAHSQD YKDGNGNTVP
SQWDKWNADA ALGWTPDDHT RLELTAGTGD GYARYAGRGM DGAHFRRETF GLSFDKRHLG
DVLDRIEARV YYNEADHVMD NYTLRQPDPT SSMPMRMAAD VRRRTVGARA AATFRFGDDF
KLVTGVDAQS NRLDSRASMG QQNYRDQPWD AQATMWSAGV FSELTWYASD VSRVIGGARV
DYASARDKRA MKSGMMMSKP NPTFDDDRTK VLPSGFVRYE RDLASLPVTW YAGIGHAERY
PDYWELFSAT RGPAGSINAF SAVQPEKTTQ LDIGAQYKSD RFDAWVSAYA GYVQDFILFN
YAAGMMGPIT QATNVNAQIM GGEAGVSWRP VAPLRVETSL AYAWGRNVAS GDPLPQMPPL
EARIGLEYTR GAWSAGGLWR IVAPQHRYAL NEGNVVGKDF GPSAGFGVLS LHTQYNVSKT
VQISVGVDNV LNKAYTEHLN LAGNAGFGYP ANAPVMEPGR TAWVRVSAKL
|
|---|
| |