Gene Bcen_2450 details

Gene Information

• Locus tag: Bcen_2450
• Symbol: fliF
• ID: 4093662
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia AU 1054
• Kingdom: Bacteria
• Replicon accession: NC_008060
• Strand: +
• Start bp: 2694350
• End bp: 2696113
• Gene Length: 1764 bp
• Protein Length: 587 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 638015729
• Product: flagellar MS-ring protein
• Protein accession: YP_622322
• Protein GI: 107023995
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0278408
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTCGC AGGCCAACTC GCTGATCAAC CCAGACGCCC GCGCGGGCCT CAGCCCGGCG 
CCCGGCGCCG CCGCGGCCGC CGCGTTGCCG GGCGCGGGCG GCGCAGGCGC GGACTTCGGG 
CTGGGCGGCT TCGCCGAACG CATTCCCGGC ATCTCGCGGA TGAAGGGCAA CCCGAAGCTG 
CCGTTCGTGA TCGCCGTCGC GTTCGCGATC GCCGCGATCA CCGCGCTCGT GCTGTGGAGC 
CGGGCGCCCG ACTACCGCGT GCTGTACAGC AACCTGTCGG ACCGCGACGG CGGCGCGATC 
ATCGCCGCGC TCCAGCAGGC AAACGTTCCC TACAAGTTCG CCGATGCCGG CGGCGCGATC 
CTGGTGCCGT CGGGCCAGGT GCACGAAACG CGCCTGAAGC TCGCCGCGAT GGGGCTGCCG 
AAAGGCGGCT CGGTCGGCTT CGAGCTGATG GACAACCAGA AATTCGGCAT CAGCCAGTTC 
GCCGAGCAGA TCAACTACCA GCGCGCGCTC GAAGGCGAGC TGCAGCGCAC CATCGAATCG 
ATCAACGCCG TGCGCGGCGC GCGCGTGCAT CTCGCGATCC CGAAGCCGTC GGTGTTCGTG 
CGCGACAAGG AAGCGCCGAG CGCGTCGGTG TTCGTCGACC TCTACCCGGG CCGCGTGCTC 
GACGAGGGCC AGGTGCAGGC GATCACGCGG ATGGTGTCGT CCGGCGTGCC CGACATGCCG 
GCCAAGAACG TGACGATCGT CGACCAGGAC GGCAACCTGC TGACCCAGAC CGCGTCCGCG 
TCCGGCCTCG ACGCGAGCCA GCTCAAGTAC GTGCAGCAGG TCGAGCACAA CACCCAGAAG 
CGCATCGACG CGATCCTCGC GCCGATCTTC GGCGCCGGCA ACGCGCGCTC GCAGGTCAGC 
GCGGATCTCG ACTTCTCGAA GATCGAGCAG ACGTCGGAAA GCTACGGCCC GAACGGCACG 
CCGCAGCAGG CCGCGATCCG CAGCCAGCAG ACCAGCAGCG CGACCGAACT CGCGCAGGGC 
GGCGCGTCGG GCGTGCCGGG GGCGCTGTCG AACACGCCGC CGCAGCCGGC CTCCGCGCCG 
ATCGTCGCCG GCAACGGCCA GAACGGGCCG CAGACCACGC CGGTCAGCGA CCGCAAGGAC 
CAGACGACCA ACTACGAGCT CGACAAGACG ATCCGCCATA CCGAACAGCC GATGGGCAGC 
GTGAAGCGGC TGTCGGTCGC GGTCGTCGTC AACTACCAGC CGGTCGCCGA CGCGAAGGGC 
CACGTGACGA TGCAGCCGCT GCCGCCCGCG AAGCTCGCGC AGGTCGAACA GCTCGTGAAG 
GACGCGATGG GCTACGACGC GAAGCGCGGC GACTCGGTAA ACGTCGTGAA CAGCGCGTTC 
TCGACCGTGA GCGACCCGTA CGCCGACCTG CCGTGGTGGC GCCAGCCCGA CATGATCGCG 
ATGGCGAAGG AAGCCGCGAA GTGGCTCGGC ATCGCGGCGG CCGCGGCGGC GCTCTACTTC 
ATGTTCGTGC GCCCGGCGAT GCGCCGCGCG TTCCCGCCGC CCGAGCCGGC CGCGCCGGCG 
CTCGCGGCGC CGGAAGACAC GGTCGCGCTC GACGGCCTGC CCGCGCCGGA AAAGGCCGCG 
GAAGAAGCCG ATCCGCTGCT GCTCGGCTTC GAGAACGAGA AGAACCGCTA CGAACGCAAC 
CTCGACTACG CGCGCACGAT CGCCCGCCAG GATCCGAAGA TCGTCGCCAC CGTCGTGAAG 
AACTGGGTGT CCGATGAACG CTGA 

 

Protein sequence

MDSQANSLIN PDARAGLSPA PGAAAAAALP GAGGAGADFG LGGFAERIPG ISRMKGNPKL 
PFVIAVAFAI AAITALVLWS RAPDYRVLYS NLSDRDGGAI IAALQQANVP YKFADAGGAI 
LVPSGQVHET RLKLAAMGLP KGGSVGFELM DNQKFGISQF AEQINYQRAL EGELQRTIES 
INAVRGARVH LAIPKPSVFV RDKEAPSASV FVDLYPGRVL DEGQVQAITR MVSSGVPDMP 
AKNVTIVDQD GNLLTQTASA SGLDASQLKY VQQVEHNTQK RIDAILAPIF GAGNARSQVS 
ADLDFSKIEQ TSESYGPNGT PQQAAIRSQQ TSSATELAQG GASGVPGALS NTPPQPASAP 
IVAGNGQNGP QTTPVSDRKD QTTNYELDKT IRHTEQPMGS VKRLSVAVVV NYQPVADAKG 
HVTMQPLPPA KLAQVEQLVK DAMGYDAKRG DSVNVVNSAF STVSDPYADL PWWRQPDMIA 
MAKEAAKWLG IAAAAAALYF MFVRPAMRRA FPPPEPAAPA LAAPEDTVAL DGLPAPEKAA 
EEADPLLLGF ENEKNRYERN LDYARTIARQ DPKIVATVVK NWVSDER