| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_1266 |
|---|
| Symbol | |
|---|
| ID | 4090879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008060 |
|---|
| Strand | + |
|---|
| Start bp | 1393840 |
|---|
| End bp | 1395480 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638014541 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_621145 |
|---|
| Protein GI | 107022818 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.335203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCG CATTTCCGGA TTCCGCGCTG CGCGCGTCGC GCCGCACCGT CTCGGTTGCG
CTGCTGCTCG CGCTCGCGCT GCCGCATGCG GCGTTCGCCC AGGGCGCGCC CGTCGCGGGC
GGCACGCTGA CCTGGGGCGT CGAAACCGAG CCCCGTACGC TGAACCCGCA ACTGAACGGC
CAGGACAAGG TCGAGCTGCT GCTGCGCAAC GCGTACGAAA GCCTGCTCGC GCAGAAGCCC
GACGGCAGCT ACGTGCCGTG GCTCGCGACC GGCTACAAGG TCTCCGCCGA CGGCAAGACC
TATACGTTCA CGCTGCGCGA CGGCGTGAAA TTCACCGACG GCGCGCCGTT CGACGCGAAG
GCCGTCGCCC GCAATTTCCT GAATGCGCGC GAATTGTCGT ATGCGGCCGG CAGCCAGCTC
GCGCGGCTGA TCTCGCACGT CGCCGACGTC AAGACGCCGG ACGAGCACAC GGTCGTCATC
ACGCTCGACG CGCCGTATGC GCCGTTCCTG ACGTTCGCCG GCCGGCTGCC GCTGCTGTCG
CCGAACGCAT TCGACCGCCC CGGCCTGAAA TCGGGCGGCC CCGACATCGC GGGCACCGGC
CCGTTCATCC TGCGCCGCTA CGTGAAGGGC CAGGAAATCG AGTTCGCGAA GAATCCCGAC
TATCGCTGGG CGCCGCCGAC CGCCGGCCAC CAGGGCCCCG CGTATCTCGA CCGGGTCGTC
TACCGGTTCC TGCCCGAATC GTCGGTCCGT ACCGGCGCGC TGCTGTCCGG CCAGGTCGAC
GTGATCGAGG GCGTGTCGGG CAACGACGCC GCGCTGATCC GCAAGAACGC CGATTTCACC
TACCGCCGCG CGCTCAACAC CGGCACGCCG TACTCGCTGT TCCTGAACGT CGGCTACGGC
CCGACGCAGG ACGTGAAGGT GCGCCGCGCG CTGCTCGAAG GGCTCGACAC GACCGGCATC
GTGCAATCGA TCTACCGCGG CGAGCGCACG CGCGCATGGG GCATCACGTC GCCGATCGAT
CCGTTCTACG ACGCGTCGAT CGAAAAGACC TACGGCAACA ACCCGAAGCT CGCGAACCAG
CTGCTCGACG AAGCCGGCTG GAGCGCGCGC GACAGCGGCG GCTTCCGCAC GAAGAACGGT
GAGCGGCTGA CGATCGCGGT CGTCCAGGCG CAGGCGACCG TGCGCGACCA GCGCGACGTG
CTGCTGCAGG CGCTGCAGGC GCAAGCGCGG CAACGACTCG GCGTGGACCT GAAGATCCAG
TACGTCGACG ACGGCACGTA CGTCGAGGCA CGCAAGAGCG GCAAGTTCGG CTCGATCGCG
AACTCGAACA CGCCGCCGGA CGGCATCGAC ATCGAAGGCC ACTACCTGCC CGTCGATCGC
GGCGGCGCGC TGAACTACAG CCGTGCGGCG GCGCCCGAGC TGACGCGCTG GCTGCAGGCG
GCCGCGCGCA CGCAGAACGT CGCCGAGCGC AGGAAGCTGT ACGGCGAGCT GCAGCACTTC
GCGATCAACG AGCAGGCGTA CGCGCTGCCG CTGTACGAGC CGGAAGACCA GATCGCCGCC
GCGAAGGCGG TCCAGGGCTT GCGCTTCCGC TCGTTCGCGC AGATGCCCGA GAACCCGTAC
GACGTGTGGG TGAAGAAGTA A
|
|---|
| Protein sequence | MTFAFPDSAL RASRRTVSVA LLLALALPHA AFAQGAPVAG GTLTWGVETE PRTLNPQLNG
QDKVELLLRN AYESLLAQKP DGSYVPWLAT GYKVSADGKT YTFTLRDGVK FTDGAPFDAK
AVARNFLNAR ELSYAAGSQL ARLISHVADV KTPDEHTVVI TLDAPYAPFL TFAGRLPLLS
PNAFDRPGLK SGGPDIAGTG PFILRRYVKG QEIEFAKNPD YRWAPPTAGH QGPAYLDRVV
YRFLPESSVR TGALLSGQVD VIEGVSGNDA ALIRKNADFT YRRALNTGTP YSLFLNVGYG
PTQDVKVRRA LLEGLDTTGI VQSIYRGERT RAWGITSPID PFYDASIEKT YGNNPKLANQ
LLDEAGWSAR DSGGFRTKNG ERLTIAVVQA QATVRDQRDV LLQALQAQAR QRLGVDLKIQ
YVDDGTYVEA RKSGKFGSIA NSNTPPDGID IEGHYLPVDR GGALNYSRAA APELTRWLQA
AARTQNVAER RKLYGELQHF AINEQAYALP LYEPEDQIAA AKAVQGLRFR SFAQMPENPY
DVWVKK
|
|---|
| |